Factsheet for Os05t0580000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 17406793

plastid: 17189339
nucleus: 18203134
plastid: 27992503
plasma membrane: 28056797

gfp PMID: 17406793 doi

SK Lee, SK Hwang, M Han, JS Eom, HG Kang, Y Han, SB Choi, MH Cho, SH Bhoo, G An, TR Hahn, TW Okita, JS Jeon

Graduate School of Biotechnology & Plant Metabolism Research Center, Kyung Hee University, Yongin 446-701, Korea.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G091600.9	Barley	plastid	91.52	90.48
TraesCS1B01G449700.2	Wheat	plastid	91.14	89.58
Zm00001d039131_P007	Maize	plastid	90.37	84.05
TraesCS1D01G427400.2	Wheat	plastid	86.32	82.81
TraesCS1A01G419600.2	Wheat	plastid	86.32	82.81
Os01t0633100-01	Rice	plastid	74.95	75.1
OQU78492	Sorghum	plastid	92.68	70.84
CDY41275	Canola	cytosol	43.74	70.5
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	60.69	68.18
GSMUA_Achr4P02930_001	Banana	mitochondrion	59.92	68.05
GSMUA_Achr9P06920_001	Banana	cytosol	67.82	67.82
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	66.28	65.65
VIT_18s0001g12840.t01	Wine grape	plastid	64.35	63.74
KRH61137	Soybean	plastid	64.35	63.02
KRH51516	Soybean	plastid	62.81	62.81
KRH24456	Soybean	plastid	63.78	62.69
CDY27626	Canola	plastid	62.43	62.67
Bra032842.1-P	Field mustard	plastid	62.43	62.67
KRH29435	Soybean	cytosol	63.97	62.64
CDX84911	Canola	plastid	61.46	62.55
KRH60824	Soybean	plastid	62.43	62.43
AT1G27680.1	Thale cress	plastid	62.24	62.36
VIT_03s0038g04570.t01	Wine grape	cytosol	63.2	62.24
PGSC0003DMT400041215	Potato	plastid	62.43	62.19
KRH51829	Soybean	plastid	63.58	62.15
Solyc01g109790.2.1	Tomato	extracellular	62.43	61.83
Solyc07g019440.2.1	Tomato	plastid	61.66	61.78
PGSC0003DMT400001935	Potato	plastid	59.34	61.6
Bra033604.1-P	Field mustard	cytosol, plastid	60.12	59.66
AT2G21590.4	Thale cress	plastid	59.73	59.27
AT4G39210.1	Thale cress	plastid	58.96	58.73
KRH15167	Soybean	mitochondrion, plastid	58.77	58.32
KRH05853	Soybean	plastid	58.77	58.21
Bra030291.1-P	Field mustard	cytosol, plastid	58.0	57.88
CDY15884	Canola	cytosol, plastid	58.0	57.88
CDX99581	Canola	cytosol, plastid	58.38	57.71
Os03t0735000-01	Rice	plastid	54.91	55.77
Os07t0243200-01	Rice	plastid	53.56	54.62
CDY56761	Canola	endoplasmic reticulum	59.92	52.27
CDX72711	Canola	cytosol	59.54	48.89
Os09t0298200-01	Rice	plastid	42.58	44.2
Os08t0345800-02	Rice	plastid	41.81	42.22
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	10.98	41.91

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	EntrezGene:4339718
ProteinID:AAD39597.1	ProteinID:AAU10700.1	ProteinID:ACY56044.1	ProteinID:ACY56045.1	ProteinID:ACY56046.1	ProteinID:ACY56047.1
ProteinID:ACY56048.1	ProteinID:ACY56049.1	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EMBL:AK100910	ProteinID:BAF18338.2
ProteinID:BAS95514.1	ncoils:Coil	EMBL:D50317	ProteinID:EEE64817.1	EMBL:EU267957	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans
EnsemblPlantsGene:Os05g0580000	EnsemblPlants:Os05t0580000-01	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810
PANTHER:PTHR43523	PANTHER:PTHR43523:SF4	UniProt:Q688T8	SUPFAM:SSF51161	SUPFAM:SSF53448	TIGRFAMs:TIGR02091
InterPro:Trimer_LpxA-like_sf	UniParc:UPI00003E2DAF	RefSeq:XP_015640472.1	RefSeq:XP_015640473.1	:	:

Description

ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment). (Os05t0580000-01)

Coordinates

chr5:-:28871794..28877277

Molecular Weight (calculated)

57657.0 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.212

Length

519 amino acids

Sequence
(BLAST)

001: MQFSSVFPLE GKACVSPIRR GGEGSASDRL KIGDSSSIKH DRAVRRMCLG YRGTKNGAQC VLTSDAGPDT LHVRTSFRRN FADPNEVAAV ILGGGTGTQL
101: FPLTSTRATP AVPIGGCYRL IDIPMSNCFN SGINKIFIMT QFNSASLNRH IHRTYLGGGI NFTDGSVEVL AATQMPGEAA GWFQGTADAV RKFIWVLEDY
201: YKHKAIEHIL ILSGDQLYRM DYMELVQKHV DDNADITLSC APVGESRASD YGLVKFDSSG RVIQFSEKPK GTDLEAMKVD TSFLNFAIDD PTKFPYIASM
301: GVYVFKRDVL LNLLKSRYAE LHDFGSEILP RALHEHNVQA YVFADYWEDI GTIRSFFDAN MALCEQPPKF EFYDPKTPFF TSPRYLPPTK SDKCRIKDAI
401: ISHGCFLREC TIEHSIVGVR SRLNSACELK NTMMMGADLY ETEDEISRLL SEGKVPIGVG ENTKINNCII DMNARVGRNV VITNSEGVQE SDRPEEGYYI
501: RSGIVVILKN ATIKDGKVI

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.