Factsheet for VIT_18s0001g12840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41275	Canola	cytosol	49.81	81.06
KRH51829	Soybean	plastid	79.77	78.72
KRH61137	Soybean	plastid	79.01	78.11
Solyc07g019440.2.1	Tomato	plastid	76.91	77.8
PGSC0003DMT400041215	Potato	plastid	77.1	77.54
CDX84911	Canola	plastid	73.66	75.69
AT1G27680.1	Thale cress	plastid	73.66	74.52
Bra032842.1-P	Field mustard	plastid	73.47	74.47
CDY27626	Canola	plastid	73.47	74.47
GSMUA_Achr9P06920_001	Banana	cytosol	71.95	72.64
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	63.93	72.51
GSMUA_Achr4P02930_001	Banana	mitochondrion	62.98	72.21
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	71.95	71.95
VIT_03s0038g04570.t01	Wine grape	cytosol	72.33	71.92
KRH15167	Soybean	mitochondrion, plastid	70.04	70.17
KRH05853	Soybean	plastid	69.66	69.66
VIT_07s0005g02800.t01	Wine grape	plastid	67.56	68.87
Os05t0580000-01	Rice	plastid	63.74	64.35
HORVU1Hr1G091600.9	Barley	plastid	63.93	63.81
TraesCS1B01G449700.2	Wheat	plastid	63.74	63.26
VIT_05s0020g02880.t01	Wine grape	plastid	61.45	61.92
Zm00001d039131_P007	Maize	plastid	64.12	60.22
Os01t0633100-01	Rice	plastid	58.4	59.07
TraesCS1A01G419600.2	Wheat	plastid	60.11	58.23
TraesCS1D01G427400.2	Wheat	plastid	60.11	58.23
OQU87201	Sorghum	plastid	57.06	57.83
VIT_12s0057g01480.t01	Wine grape	plastid	48.09	49.51
OQU78492	Sorghum	plastid	63.74	49.19
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	55.15	43.92
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	10.88	41.91
VIT_05s0094g01500.t01	Wine grape	plastid	35.31	38.87

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100241983	wikigene:100241983	Gene3D:2.160.10.10	MapMan:3.2.2.3
Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	ProteinID:CBI19730	ProteinID:CBI19730.3	UniProt:E0CQG1
EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
EntrezGene:LOC100241983	wikigene:LOC100241983	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF5	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001985467	ArrayExpress:VIT_18s0001g12840	EnsemblPlantsGene:VIT_18s0001g12840	EnsemblPlants:VIT_18s0001g12840.t01
unigene:Vvi.10529	RefSeq:XP_002281223	RefSeq:XP_002281223.1	RefSeq:XP_019072209.1	RefSeq:XP_019072210.1	SEG:seg

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:E0CQG1]

Coordinates

chr18:-:10940330..10945165

Molecular Weight (calculated)

58334.1 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.206

Length

524 amino acids

Sequence
(BLAST)

001: MDSCCAKVKG NVHPVPVRNR GVGKVGSGFW GERIGTSLWS SSFSNRQWKS LRKERKAKTI NRAVLTPDVD QENLIFEGPV FEKQHADPSS VAAIILGGGA
101: GTRLFPLTSR RAKPAVPIGG CYRLIDVPMS NCINSGIRKI FILTQFNSAS LNRHIARIYN FGNGVNFGDG FVEVLAATQT PGEAGQKWFQ GTADAVRQFI
201: WVFEDAKNKN VEHILILSGD HLYRMDYMDF VQKHIDSNAD ITVSCVPMDD SRASDYGLMK IDNTGRIIQF SEKPKGPNLK AMKVNTTLLG LSEKEAEKCP
301: YIASMGVYVF RTDVLLKLLT RKYLSCNDFG SEIIPLAVKD HNVQAYLFND YWEDIGTIKS FFDANLALTE QPPKFEFYDP KTPFYTSPRF LPPTKVEECR
401: ILDAIISHGC FLRECSVQRS IVGVRSRLEY GVELKDTMMM GADYYQTESE IASLLAEGKV PIGVGQNTRI RNCIIDKNAK IGRDVVIANA DGVQEADRPS
501: EGFYIRSGIT VILKNATIND GTII

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.