CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05853	Soybean	plastid	94.07	93.89
KRH51829	Soybean	plastid	74.19	73.07
CDY41275	Canola	cytosol	44.74	72.67
KRH61137	Soybean	plastid	73.23	72.26
VIT_18s0001g12840.t01	Wine grape	plastid	70.17	70.04
CDX84911	Canola	plastid	66.54	68.24
Bra032842.1-P	Field mustard	plastid	66.92	67.7
CDY27626	Canola	plastid	66.92	67.7
AT1G27680.1	Thale cress	plastid	66.16	66.8
PGSC0003DMT400041215	Potato	plastid	65.97	66.22
Solyc07g019440.2.1	Tomato	plastid	65.58	66.22
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	57.74	65.37
KRH24456	Soybean	plastid	65.77	65.15
GSMUA_Achr4P02930_001	Banana	mitochondrion	56.79	64.99
KRH29435	Soybean	cytosol	65.39	64.53
GSMUA_Achr9P06920_001	Banana	cytosol	63.86	64.35
KRH51516	Soybean	plastid	63.29	63.78
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	63.67	63.55
KRH60824	Soybean	plastid	62.91	63.39
KRG96634	Soybean	plastid	59.66	58.98
Os05t0580000-01	Rice	plastid	58.32	58.77
HORVU1Hr1G091600.9	Barley	plastid	58.32	58.1
TraesCS1B01G449700.2	Wheat	plastid	58.51	57.95
KRH51050	Soybean	nucleus, plastid	57.17	57.5
KRH68365	Soybean	plastid	58.13	57.47
KRH02097	Soybean	nucleus, plastid	57.17	57.17
Zm00001d039131_P007	Maize	plastid	60.04	56.27
Os01t0633100-01	Rice	plastid	54.68	55.21
OQU87201	Sorghum	plastid	52.2	52.8
TraesCS1A01G419600.2	Wheat	plastid	54.3	52.5
TraesCS1D01G427400.2	Wheat	plastid	54.3	52.5
KRH14151	Soybean	cytosol	17.78	50.82
KRH73984	Soybean	nucleus, plastid	46.65	47.38
KRH14152	Soybean	plastid	28.3	46.11
OQU78492	Sorghum	plastid	59.46	45.8
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	10.71	41.18
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	51.43	40.88

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100798736	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10
UniProt:A0A0R0GLW2	EMBL:ACUP02008567	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EnsemblPlantsGene:GLYMA_14G072500	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:Hexapep	InterPro:IPR029044	EnsemblPlants:KRH15167
ProteinID:KRH15167	ProteinID:KRH15167.1	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00132	PFAM:PF00483
ScanProsite:PS00809	PANTHER:PTHR43523	PANTHER:PTHR43523:SF5	MetaCyc:PWY-622	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000233B2A0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:+:6092344..6097000

Molecular Weight (calculated)

57885.4 Da

IEP (calculated)

7.865

GRAVY (calculated)

-0.188

Length

523 amino acids

Sequence
(BLAST)

001: MDAIIATLNA RANLVTKGIG SRNRSSSGFW GENTRGSLNI RFCSTPRKSL KATTFKPGFA QAVYTPDVNK EPQIFQGPIF QSPKANPENV VAIILGGGAG
101: TRLFPLTSTR AKQAVPIAGC YRLIDIPMSN CINSGIRKVY VLTQFNSFSL NGHLSRTYNF GNGVNFGGGF VEVLAATLTN GEAGNKWFQG TADAVRRFSW
201: VFEDAKNKNI EHILIISGDH LCRMDYMKLV EKHIGTNADI TVSCVPMDES RASDYELMKI DRKGEITQFV EKPEGSDLKA MHVDTTLLGL TAEEAQTYPY
301: IAPMGVSVFR TETLLKLLRW SCPSCNDFGS EIIPSALRDH KVQAYMFRDY WKDIGTIKSF FEANLELTKQ SPNFEFYDQE SPFFTSPRFL PPTKAIKCKI
401: VDAIISHGCF LSECRVQHSI VGVRSRLESG SELQDTMMMG ADYYQTDSEI ATLLKEGKVP IGVGENTKIR NCIIDKNARI GRNVIIANTD GVQEADRPME
501: GFYIRSGIVV VANNATIEDG TVI

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.