CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27626	Canola	plastid	97.65	96.33
CDY41275	Canola	cytosol	60.78	96.27
AT1G27680.1	Thale cress	plastid	91.76	90.35
VIT_18s0001g12840.t01	Wine grape	plastid	75.69	73.66
KRH51829	Soybean	plastid	75.49	72.5
KRH61137	Soybean	plastid	75.29	72.45
PGSC0003DMT400041215	Potato	plastid	71.96	70.44
Solyc07g019440.2.1	Tomato	plastid	71.37	70.27
GSMUA_Achr4P02930_001	Banana	mitochondrion	61.96	69.15
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	62.55	69.05
GSMUA_Achr9P06920_001	Banana	cytosol	69.61	68.4
KRH15167	Soybean	mitochondrion, plastid	68.24	66.54
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	68.04	66.22
KRH05853	Soybean	plastid	68.04	66.22
CDY02573	Canola	plastid	63.53	62.79
CDX92546	Canola	plastid	63.53	62.79
CDY15884	Canola	cytosol, plastid	63.92	62.69
CDY68209	Canola	plastid	63.33	62.6
CDX99581	Canola	cytosol, plastid	64.12	62.29
Os05t0580000-01	Rice	plastid	62.55	61.46
CDY47206	Canola	plastid	63.53	59.89
HORVU1Hr1G091600.9	Barley	plastid	61.37	59.62
TraesCS1B01G449700.2	Wheat	plastid	61.18	59.09
Zm00001d039131_P007	Maize	plastid	62.94	57.53
Os01t0633100-01	Rice	plastid	57.84	56.95
CDY56761	Canola	endoplasmic reticulum	65.1	55.8
OQU87201	Sorghum	plastid	56.47	55.71
TraesCS1A01G419600.2	Wheat	plastid	57.65	54.34
TraesCS1D01G427400.2	Wheat	plastid	57.65	54.34
CDX72711	Canola	cytosol	64.71	52.22
CDX86314	Canola	plastid	50.2	49.9
CDY68655	Canola	plastid	50.0	49.9
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	12.94	48.53
CDY27884	Canola	plastid	49.41	48.46
CDY00843	Canola	plastid	49.22	48.27
OQU78492	Sorghum	plastid	61.96	46.54
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	54.9	42.55
CDY10130	Canola	plastid	35.1	37.14
CDY47264	Canola	plastid	34.71	36.72

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	GO:A0A078D6G2
InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EnsemblPlants:CDX84911	ProteinID:CDX84911	ProteinID:CDX84911.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0008878	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252
EnsemblPlantsGene:GSBRNA2T00142241001	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF5	MetaCyc:PWY-622	SUPFAM:SSF51161
SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniPathway:UPA00164	UniParc:UPI0004EF2BDE	SEG:seg

Description

BnaC05g21440D

Coordinates

chrLK031839:-:102871..106439

Molecular Weight (calculated)

56427.8 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.159

Length

510 amino acids

Sequence
(BLAST)

001: MACCCPAMKF QRPFGLNRKV VSDSGRDSSF WGAEVVKANH LKAQSGPQKI QTRLIRSVLT PSVDQESHEP LLRTPRADPK NVASIILGGG AGTRLFPLTS
101: KRAKPAVPIG GCYRLIDIPM SNCINSGIRK IFILTQFNSF SLNRHLSRTY NFGNGVNFGD GFVEVLAATQ TSGDAGKKWF QGTADAVRQF IWVFEDAKTK
201: NVEHVLILSG DHLYRMDYMN FVQKHIESNA DITVSCVPMD ESRASDYGLL KIDESGQIIQ FSEKPKGDDL KAMQVDTTVL GLPPKEAAEL PYIASMGVYV
301: FRKEVLLKLL RSSYPTSNDF GSEIIPLAVK EHNVQAFLFN DYWEDIGTIG SFFDANLALT EQPPKFQFYD PKTPFFTSPR FLPPTKILDS IVSHGCFLRE
401: CSVQHSIVGI RSRVESGVEL QDTMMMGADF YQTEAEIASL LAEGKVPIGV GENTKIRNCI IDKNAKIGKN VVIANADGVE EGDRQEEGFY IRSGITVVLK
501: NATIRDGLVL

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.