CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41275	Canola	cytosol	44.85	18.94
CDX84911	Canola	plastid	48.53	12.94
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	43.38	12.77
Bra032842.1-P	Field mustard	plastid	48.53	12.77
CDY27626	Canola	plastid	48.53	12.77
GSMUA_Achr4P02930_001	Banana	mitochondrion	41.18	12.25
AT1G27680.1	Thale cress	plastid	44.85	11.78
KRH61137	Soybean	plastid	45.59	11.7
CDY02573	Canola	plastid	42.65	11.24
KRH51829	Soybean	plastid	43.38	11.11
CDX92546	Canola	plastid	41.91	11.05
CDY68209	Canola	plastid	41.91	11.05
GSMUA_Achr9P06920_001	Banana	cytosol	41.91	10.98
Os05t0580000-01	Rice	plastid	41.91	10.98
PGSC0003DMT400041215	Potato	plastid	41.91	10.94
VIT_18s0001g12840.t01	Wine grape	plastid	41.91	10.88
Solyc07g019440.2.1	Tomato	plastid	41.18	10.81
CDY47206	Canola	plastid	42.65	10.72
KRH15167	Soybean	mitochondrion, plastid	41.18	10.71
KRH05853	Soybean	plastid	41.18	10.69
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	40.44	10.5
Zm00001d039131_P007	Maize	plastid	42.65	10.39
Os01t0633100-01	Rice	plastid	38.97	10.23
HORVU1Hr1G091600.9	Barley	plastid	38.97	10.1
TraesCS1B01G449700.2	Wheat	plastid	38.97	10.04
CDX99581	Canola	cytosol, plastid	38.24	9.9
CDY15884	Canola	cytosol, plastid	37.5	9.81
TraesCS1A01G419600.2	Wheat	plastid	38.97	9.8
TraesCS1D01G427400.2	Wheat	plastid	38.97	9.8
OQU87201	Sorghum	plastid	35.29	9.28
OQU78492	Sorghum	plastid	41.91	8.39
CDY56761	Canola	endoplasmic reticulum	35.29	8.07
CDY68655	Canola	plastid	28.68	7.63
CDX86314	Canola	plastid	28.68	7.6
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	36.76	7.6
CDX72711	Canola	cytosol	35.29	7.59
CDY27884	Canola	plastid	27.21	7.12
CDY00843	Canola	plastid	27.21	7.12
CDY10130	Canola	plastid	24.26	6.85
CDY47264	Canola	plastid	23.53	6.64

Protein Annotations

EnsemblPlants:CDY11773	EnsemblPlantsGene:GSBRNA2T00049997001	Gene3D:2.160.10.10	GO:A0A078FI55	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR43523	PANTHER:PTHR43523:SF5	ProteinID:CDY11773	ProteinID:CDY11773.1
SEG:seg	SUPFAM:SSF51161	TMHMM:TMhelix	UniParc:UPI0004EDBAA4	UniProt:A0A078FI55	MapMan:35.1

Description

BnaC03g58050DBnaC03g58050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI55]

Coordinates

chrLK032014:-:256583..257836

Molecular Weight (calculated)

15238.7 Da

IEP (calculated)

8.660

GRAVY (calculated)

0.127

Length

136 amino acids

Sequence
(BLAST)

001: MALSDIFTNE LVQVRVSGYL LLLFFALLSL CCFYINQPPK SPSHHRCRHL LHSTAIAVHS TSTIKHSIVG IRSRVESEVE LRDTIVMGAD FYQTEAEIMS
101: MLAEGKVPIS VGENTKIRNC MSASLTRMPR LGKTWS

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.