Factsheet for Solyc07g019440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041215	Potato	plastid	98.07	97.5
VIT_18s0001g12840.t01	Wine grape	plastid	77.8	76.91
CDY41275	Canola	cytosol	47.1	75.78
KRH61137	Soybean	plastid	75.29	73.58
KRH51829	Soybean	plastid	75.1	73.26
CDX84911	Canola	plastid	70.27	71.37
Bra032842.1-P	Field mustard	plastid	70.66	70.79
CDY27626	Canola	plastid	70.66	70.79
AT1G27680.1	Thale cress	plastid	70.46	70.46
GSMUA_Achr4P02930_001	Banana	mitochondrion	60.81	68.93
Solyc01g109790.2.1	Tomato	extracellular	68.73	67.94
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	60.42	67.75
GSMUA_Achr9P06920_001	Banana	cytosol	67.76	67.63
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	67.95	67.18
KRH15167	Soybean	mitochondrion, plastid	66.22	65.58
KRH05853	Soybean	plastid	65.83	65.08
Os05t0580000-01	Rice	plastid	61.78	61.66
Solyc01g079790.2.1	Tomato	nucleus, plastid	60.81	61.16
HORVU1Hr1G091600.9	Barley	plastid	61.39	60.57
TraesCS1B01G449700.2	Wheat	plastid	61.39	60.23
Zm00001d039131_P007	Maize	plastid	62.36	57.89
OQU87201	Sorghum	plastid	55.79	55.9
Os01t0633100-01	Rice	plastid	55.6	55.6
Solyc12g011120.1.1	Tomato	plastid	46.91	54.98
TraesCS1A01G419600.2	Wheat	plastid	57.34	54.9
TraesCS1D01G427400.2	Wheat	plastid	57.34	54.9
Solyc07g056140.2.1	Tomato	plastid	48.07	47.79
OQU78492	Sorghum	plastid	61.58	46.98
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	54.25	42.71
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	10.81	41.18
Solyc08g015670.2.1	Tomato	plastid	32.43	36.21

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase
InterPro:ADP_Glu_pyroP_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
UniProt:K4CCQ6	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809
ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF5	SUPFAM:SSF51161	SUPFAM:SSF53448	EnsemblPlantsGene:Solyc07g019440.2
EnsemblPlants:Solyc07g019440.2.1	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000276C5A6	SEG:seg	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:K4CCQ6]

Coordinates

chr7:-:11193230..11198353

Molecular Weight (calculated)

57343.0 Da

IEP (calculated)

8.238

GRAVY (calculated)

-0.149

Length

518 amino acids

Sequence
(BLAST)

001: MDALCAGTAQ SVAICNQEST FWGQKISGRR LINKGFGVRW CKSFTTQQRG KNVTSAVLTR DINKEMLPFE NSMFEEQPTA DPKAVASVIL GGGVGTRLFP
101: LTSRRAKPAV PIGGCYRLID VPMSNCINSG IRKIFILTQF NSFSLNRHLA RTYNFGNGVG FGDGFVEVLA ATQTPGDAGK MWFQGTADAV RQFIWVFENQ
201: KNKNVEHIII LSGDHLYRMN YMDFVQKHID ANADITVSCV PMDDGRASDF GLMKIDETGR IIQFAEKPKG PALKAMQVDT SILGLSEQEA SNFPYIASMG
301: VYVFKTDVLL KLLKSAYPSC NDFGSEIIPS AVKDHNVQAY LFNDYWEDIG TVKSFFDANL ALTKQPPKFD FNDPKTPFYT SARFLPPTKV DKSRIVDAII
401: SHGCFLRECN IQHSIVGVRS RLDYGVEFKD TMMMGADYYQ TESEIASLLA EGKVPIGVGP NTKIQKCIID KNAKIGKDVV ILNKQGVEEA DRSAEGFYIR
501: SGITVIMKNA TIKDGTVI

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.