Factsheet for Solyc01g079790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023304	Potato	cytosol, plastid	98.06	98.06
VIT_05s0020g02880.t01	Wine grape	plastid	82.33	81.54
Bra002221.1-P	Field mustard	plastid	80.78	80.62
CDX92546	Canola	plastid	80.78	80.62
CDY68209	Canola	plastid	80.58	80.43
CDY02573	Canola	plastid	80.0	79.84
Bra023713.1-P	Field mustard	plastid	79.42	79.26
KRH51050	Soybean	nucleus, plastid	79.61	78.85
AT5G19220.1	Thale cress	plastid	79.61	78.54
KRH02097	Soybean	nucleus, plastid	79.22	78.01
CDY47206	Canola	plastid	79.42	75.6
Os03t0735000-01	Rice	plastid	73.98	74.56
EER90919	Sorghum	plastid	72.82	73.96
TraesCS5B01G484700.1	Wheat	plastid	72.04	73.9
TraesCS5D01G484500.2	Wheat	plastid	71.65	73.07
TraesCS5A01G472000.1	Wheat	plastid	71.46	72.87
GSMUA_Achr1P11820_001	Banana	plastid	75.53	71.64
Zm00001d033910_P002	Maize	plastid	72.82	71.56
HORVU0Hr1G033200.1	Barley	plastid	36.89	64.41
HORVU1Hr1G001590.2	Barley	plastid	25.05	61.72
HORVU7Hr1G093330.2	Barley	plastid	29.13	61.22
Solyc07g019440.2.1	Tomato	plastid	61.16	60.81
Solyc01g109790.2.1	Tomato	extracellular	60.58	59.54
Solyc12g011120.1.1	Tomato	plastid	49.32	57.47
HORVU4Hr1G025240.1	Barley	plastid	25.63	52.17
Solyc07g056140.2.1	Tomato	plastid	51.26	50.67
Solyc08g015670.2.1	Tomato	plastid	33.98	37.72

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase
InterPro:ADP_Glu_pyroP_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0019252	InterPro:IPR029044	UniProt:K4AXM4	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483
ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF8	SUPFAM:SSF51161
SUPFAM:SSF53448	EnsemblPlantsGene:Solyc01g079790.2	EnsemblPlants:Solyc01g079790.2.1	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0002761F3B
SEG:seg	:	:	:	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:K4AXM4]

Coordinates

chr1:+:78922547..78926789

Molecular Weight (calculated)

56857.2 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.163

Length

515 amino acids

Sequence
(BLAST)

001: MSVATDGRFA LLRNNPAALT GTNLKIVKFC NGELMGKKLK YTKFQLRSNV VKPNICMSLT TDIAGEAKLK DLEAKKEDAR TVVAIILGGG AGTRLFPLTK
101: RRAKPAVPIG GAYRLIDVPM SNCINSGINK VYILTQFNSA SLNRHIARAY NFGNGVTFGD GYVEVLAATQ TPGELGKRWF QGTADAVRQF HWLFEDARSK
201: DIEDVLILSG DHLYRMDYLH FVQSHRQSGA DITISSLPID DSRASDFGLM KIDDTGRVMS FSEKPKGDDL KAMAVDTTVL GLSPEEAKEK PYIASMGVYV
301: FKKDILLNLL RWRFPTANDF GSEIIPASTK EFCVKAYLFN DYWEDIGTIR SFFEANLALT EHPPRFSFYD ATKPIYTSRR NLPPSAIDNS KIVDSIVSHG
401: SFLTNCFVEH SVVGIRSRIG TNVHLKDTVM LGADYYETDA EIASQLAEGK VPLGIGENTR IKECIIDKNA RIGKNVVIAN SEGVQEADRS SEGFYIRSGI
501: TVILKNSTIP DGTVI

Best Arabidopsis Sequence Match ( AT5G19220.1 )
(BLAST)

001: MVVSADCRIS LSAPSCIRSS STGLTRHIKL GSFCNGELMG KKLNLSQLPN IRLRSSTNFS QKRILMSLNS VAGESKVQEL ETEKRDPRTV ASIILGGGAG
101: TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQYNSASL NRHLARAYNS NGLGFGDGYV EVLAATQTPG ESGKRWFQGT ADAVRQFHWL
201: FEDARSKDIE DVLILSGDHL YRMDYMDFIQ DHRQSGADIS ISCIPIDDRR ASDFGLMKID DKGRVISFSE KPKGDDLKAM AVDTTILGLS KEEAEKKPYI
301: ASMGVYVFKK EILLNLLRWR FPTANDFGSE IIPFSAKEFY VNAYLFNDYW EDIGTIRSFF EANLALTEHP GAFSFYDAAK PIYTSRRNLP PSKIDNSKLI
401: DSIISHGSFL TNCLIEHSIV GIRSRVGSNV QLKDTVMLGA DYYETEAEVA ALLAEGNVPI GIGENTKIQE CIIDKNARVG KNVIIANSEG IQEADRSSDG
501: FYIRSGITVI LKNSVIKDGV VI

Arabidopsis Description

ADG2Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55229]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.