Factsheet for VIT_05s0020g02880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51050	Soybean	nucleus, plastid	83.65	83.65
KRH02097	Soybean	nucleus, plastid	83.27	82.79
Solyc01g079790.2.1	Tomato	nucleus, plastid	81.54	82.33
PGSC0003DMT400023304	Potato	cytosol, plastid	81.15	81.94
CDY02573	Canola	plastid	80.77	81.4
Bra002221.1-P	Field mustard	plastid	80.38	81.01
CDY68209	Canola	plastid	80.38	81.01
CDX92546	Canola	plastid	80.38	81.01
Bra023713.1-P	Field mustard	plastid	80.0	80.62
AT5G19220.1	Thale cress	plastid	79.62	79.31
CDY47206	Canola	plastid	80.19	77.08
GSMUA_Achr1P11820_001	Banana	plastid	79.04	75.69
Os03t0735000-01	Rice	plastid	73.65	74.95
EER90919	Sorghum	plastid	71.54	73.37
TraesCS5B01G484700.1	Wheat	plastid	70.58	73.11
TraesCS5A01G472000.1	Wheat	plastid	70.19	72.28
TraesCS5D01G484500.2	Wheat	plastid	70.19	72.28
Zm00001d033910_P002	Maize	plastid	71.15	70.61
HORVU0Hr1G033200.1	Barley	plastid	36.35	64.07
HORVU1Hr1G001590.2	Barley	plastid	25.38	63.16
HORVU7Hr1G093330.2	Barley	plastid	29.23	62.04
VIT_07s0005g02800.t01	Wine grape	plastid	60.77	61.48
VIT_18s0001g12840.t01	Wine grape	plastid	61.92	61.45
VIT_03s0038g04570.t01	Wine grape	cytosol	60.19	59.39
HORVU4Hr1G025240.1	Barley	plastid	25.96	53.36
VIT_12s0057g01480.t01	Wine grape	plastid	50.0	51.08
VIT_05s0094g01500.t01	Wine grape	plastid	36.73	40.13

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100263079	wikigene:100263079	Gene3D:2.160.10.10	MapMan:3.2.2.3
Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	ProteinID:CCB50395	ProteinID:CCB50395.1	UniProt:F6HDM4
EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
EntrezGene:LOC100263079	wikigene:LOC100263079	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF8	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00015C827A	ArrayExpress:VIT_05s0020g02880	EnsemblPlantsGene:VIT_05s0020g02880	EnsemblPlants:VIT_05s0020g02880.t01
unigene:Vvi.20085	RefSeq:XP_002281069	RefSeq:XP_002281069.1	SEG:seg	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:F6HDM4]

Coordinates

chr5:-:4559776..4563543

Molecular Weight (calculated)

57957.7 Da

IEP (calculated)

9.017

GRAVY (calculated)

-0.217

Length

520 amino acids

Sequence
(BLAST)

001: MAVSTDARIS LSAAGQLHGT TGLAGRSLRQ VKFCNGEMMG KKLKMTQLGM FRNKSVGKHV CMSLATDVAA DSKLRDLEME KRDPRTVVAV ILGGGAGTRL
101: FPLTKRRAKP AVPIGGSYRL IDVPMSNCIN SGINKVYILT QFNSASLNRH LARAYNFGHG VNFGDGYVEA LAATQTPGEA GKRWFQGTAD AVRQFHWLFE
201: DQRSKEIEDV LILSGDHLYR MDYMDFVQNH RQSGADITIS CLPMDDSRAS DFGLMKIDNK GRVLFFSEKP KGEDLKAMEV DTKVLGLSRE EAEKKPYIAS
301: MGVYVFKKEI LLNLLRWRFP TANDFGSEII PASAKEFFIK AYLFNDYWED IGTIRSFFEA NLALTAHPPR FSFYDATKPM YTSRRNLPPS KIDDSKIVDS
401: IISHGSFLNN CFIEHSVVGI RSRVNSNVHL KDTVMLGADY YETDSEVASL LAEGRVPIGI GENTRIKDCI IDKNARIGKN VVISNSEGIQ EADRSLEGFY
501: IRSGITIILK NFTIKDGFVI

Best Arabidopsis Sequence Match ( AT5G19220.1 )
(BLAST)

001: MVVSADCRIS LSAPSCIRSS STGLTRHIKL GSFCNGELMG KKLNLSQLPN IRLRSSTNFS QKRILMSLNS VAGESKVQEL ETEKRDPRTV ASIILGGGAG
101: TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQYNSASL NRHLARAYNS NGLGFGDGYV EVLAATQTPG ESGKRWFQGT ADAVRQFHWL
201: FEDARSKDIE DVLILSGDHL YRMDYMDFIQ DHRQSGADIS ISCIPIDDRR ASDFGLMKID DKGRVISFSE KPKGDDLKAM AVDTTILGLS KEEAEKKPYI
301: ASMGVYVFKK EILLNLLRWR FPTANDFGSE IIPFSAKEFY VNAYLFNDYW EDIGTIRSFF EANLALTEHP GAFSFYDAAK PIYTSRRNLP PSKIDNSKLI
401: DSIISHGSFL TNCLIEHSIV GIRSRVGSNV QLKDTVMLGA DYYETEAEVA ALLAEGNVPI GIGENTKIQE CIIDKNARVG KNVIIANSEG IQEADRSSDG
501: FYIRSGITVI LKNSVIKDGV VI

Arabidopsis Description

ADG2Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55229]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.