Factsheet for VIT_05s0094g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064936	Potato	cytosol	21.64	66.03
Solyc08g015670.2.1	Tomato	plastid	57.35	58.84
AT1G05610.2	Thale cress	plastid	57.98	57.26
CDY10130	Canola	plastid	57.14	56.43
CDY47264	Canola	plastid	56.72	56.02
Bra015444.1-P	Field mustard	plastid	56.51	55.81
GSMUA_Achr3P21710_001	Banana	plastid	42.02	51.68
VIT_12s0057g01480.t01	Wine grape	plastid	48.53	45.38
VIT_07s0005g02800.t01	Wine grape	plastid	39.92	36.97
VIT_05s0020g02880.t01	Wine grape	plastid	40.13	36.73
VIT_03s0038g04570.t01	Wine grape	cytosol	39.5	35.67
VIT_18s0001g12840.t01	Wine grape	plastid	38.87	35.31

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100262934	wikigene:100262934	Gene3D:2.160.10.10	MapMan:3.2.2.3
Gene3D:3.90.550.10	InterPro:ADP_Glu_pyroP_CS	ProteinID:CBI24766	ProteinID:CBI24766.3	UniProt:D7T2N5	EMBL:FN595507
GO:GO:0000906	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0005975
GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058
GO:GO:0009231	GO:GO:0009349	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	InterPro:IPR029044
EntrezGene:LOC100262934	wikigene:LOC100262934	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00809
PANTHER:PTHR43523	PANTHER:PTHR43523:SF3	SUPFAM:SSF51161	SUPFAM:SSF53448	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001BE27FB
ArrayExpress:VIT_05s0094g01500	EnsemblPlantsGene:VIT_05s0094g01500	EnsemblPlants:VIT_05s0094g01500.t01	RefSeq:XP_002276188	RefSeq:XP_002276188.2	SEG:seg

Description

No Description!

Coordinates

chr5:+:24787599..24790514

Molecular Weight (calculated)

52239.6 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.109

Length

476 amino acids

Sequence
(BLAST)

001: MVILQLALPT TSSANLRPKL PSLGGKQATV PPSLCVSNSQ QSEHPASLSR PANRQSVAAI VFGDGSESQL YPLTKRRSEG AVHIAGSYRL IDAVVSNCIN
101: SNITKIYALT QFNSTSLNSH LCRAYSGVGL EVVAAYQSPE ARGWFQGTAD AVRRCLWLVE EHPVAEFLVL PGYHLYRMDY QKLIQAHRQS KADITIVALS
201: AEISRETGLG ILEVNSENQV VEFSKRSEKE PATIISVSYF GLSSSLSQYF SGMGIYVVKK EIMIKLLSEH FPKANGFGSE VIPGAISIGM KVEAFAFDGY
301: WEDMRNIEAF YQANMEITKK TDVGYNFYDR DSPLYTLPRN LPPTLITDAV ITDSIIGDGC ILDRCEIRGT IVGLRTKIGD RAVIEDSVIM GSDIYQPEDE
401: LRRDMKGTGN DIPIGIGEDT HIRKAIVDKN ARIGKQVLIM NRDNVQEGNR EAHGYTISEG IVVVLKGAVI PDGSIL

Best Arabidopsis Sequence Match ( AT1G05610.2 )
(BLAST)

001: MQISSSSFIT KFTNLHMVRS TSDHHQWRHN YNLKQLFIPN LSVSNSQHLP LNQSVAAIVF GGGSDSELYP LTKTRSKGAI PIAANYRLID AVISNCINSG
101: ITKIYAITQF NSTSLNSHLS KAYSGFGLGK DRFVEVIAAY QSLEDQGWFQ GTADAIRRCL WVFEEFPVTE FLVLPGHHLY KMDYKMLIED HRRSRADITI
201: VGLSSVTDHD FGFGFMEVDS TNAVTRFTIK GQQDLISVAN RTATRSDGTS SCSVPSAGIY VIGREQMVKL LRECLIKSKD LASEIIPGAI SEGMKVKAHM
301: FDGYWEDVRS IGAYYRANME SIKRCRLDLN YRFYDRQCPL YTMPRCLPPS SMSVAVITNS IIGDGCILDK CVIRGSVVGM RTRIADEVIV EDSIIVGSDI
401: YEMEEDVRRK GKEKKIEIRI GIGEKSRIRR AIVDKNARIG KNVMIINRDN VEEGNREAQG YVIREGIIII LRNAVIPNDS IL

Arabidopsis Description

APS2ADP-glucose pyrophosphorylase small subunit 2 [Source:TAIR;Acc:AT1G05610]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.