Factsheet for VIT_03s0038g04570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51516	Soybean	plastid	77.23	78.42
KRH60824	Soybean	plastid	76.85	78.03
PGSC0003DMT400001935	Potato	plastid	73.81	77.8
KRH24456	Soybean	plastid	77.61	77.46
Solyc01g109790.2.1	Tomato	extracellular	76.47	76.91
KRH29435	Soybean	cytosol	76.85	76.42
VIT_18s0001g12840.t01	Wine grape	plastid	71.92	72.33
AT4G39210.1	Thale cress	plastid	71.35	72.17
GSMUA_Achr4P02930_001	Banana	mitochondrion	62.43	71.99
Bra033604.1-P	Field mustard	cytosol, plastid	71.35	71.89
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	62.81	71.64
GSMUA_Achr9P06920_001	Banana	cytosol	69.45	70.52
AT2G21590.4	Thale cress	plastid	69.83	70.36
CDY15884	Canola	cytosol, plastid	69.07	70.0
Bra030291.1-P	Field mustard	cytosol, plastid	68.88	69.81
CDX99581	Canola	cytosol, plastid	68.88	69.14
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	68.69	69.08
VIT_07s0005g02800.t01	Wine grape	plastid	64.33	65.95
CDY56761	Canola	endoplasmic reticulum	71.73	63.53
Os05t0580000-01	Rice	plastid	62.24	63.2
HORVU1Hr1G091600.9	Barley	plastid	61.48	61.71
TraesCS1B01G449700.2	Wheat	plastid	61.29	61.17
VIT_05s0020g02880.t01	Wine grape	plastid	59.39	60.19
CDX72711	Canola	cytosol	71.73	59.81
Zm00001d039131_P007	Maize	plastid	62.24	58.78
Os01t0633100-01	Rice	plastid	56.93	57.92
OQU87201	Sorghum	plastid	56.36	57.45
TraesCS1A01G419600.2	Wheat	plastid	58.25	56.75
TraesCS1D01G427400.2	Wheat	plastid	58.06	56.56
OQU78492	Sorghum	plastid	62.43	48.45
VIT_12s0057g01480.t01	Wine grape	plastid	46.68	48.33
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	54.08	43.31
VIT_05s0094g01500.t01	Wine grape	plastid	35.67	39.5

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100253688	wikigene:100253688	Gene3D:2.160.10.10	MapMan:3.2.2.3
Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	ProteinID:CCB60481	ProteinID:CCB60481.1	UniProt:F6I0L5
EMBL:FN596508	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
EntrezGene:LOC100253688	wikigene:LOC100253688	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF4	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGR:TC57058	TIGR:TC64860	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00015C90A3	ArrayExpress:VIT_03s0038g04570
EnsemblPlantsGene:VIT_03s0038g04570	EnsemblPlants:VIT_03s0038g04570.t01	unigene:Vvi.16855	unigene:Vvi.9851	RefSeq:XP_002283855	RefSeq:XP_002283855.1
SEG:seg	:	:	:	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:F6I0L5]

Coordinates

chr3:+:3353187..3358631

Molecular Weight (calculated)

58544.5 Da

IEP (calculated)

8.381

GRAVY (calculated)

-0.202

Length

527 amino acids

Sequence
(BLAST)

001: MDSCCVTFKA KAHLAKASRG GLSNGDNEFW GERIRGSLNN SGWVSQLAKG LKTEKRPRKI KPGVACSVIT SNNGKETVTI QAPIFERRRA DPKNVASIIL
101: GGGAGTQLFP LTIRQATPAV PVGGCYRLID IPMSNCINSN INKIFILTQF NSASLNRHIA RTYFGNGVNF GDGFVEVLAA TQTPGEAGMK WFEGTADAVR
201: KFIWVFEDAK NKNIENILIL SGDHLYRMDY MDLVQNHIDR KADITVSCVP VGESRASDYG LLKMDNRGRI IQFAEKPKGA DLKAMKVDTT RLGLSPQEAM
301: KSPYIASMGV YVFKTDILLN LLRWRYPTSN DFGSEIIPLA VMEHNVEAFL FRDYWEDIGT IKTFYEANMG LTEEFPKFEF YNPKTPIFTS PRFLPPTKIE
401: QCQVVDAIIS HGCFLRECSV KHSIVGERSR LDYGVELKDT LMMGADFYQT ESEIASLLAE GNVPIGIGRN TKIRNCIIDK NAKIGKDAVI VNKDGVQEAD
501: RPDDGFYIRS GITIILEKAT IKDGTVI

Best Arabidopsis Sequence Match ( AT4G39210.1 )
(BLAST)

001: MDSCCNFSLG TKTVLAKDSF KNVENKFLGE KIKGSVLKPF SSDLSSKKFR NRKLRPGVAY AIATSKNAKE ALKNQPSMFE RRRADPKNVA AIILGGGDGA
101: KLFPLTKRAA TPAVPVGGCY RMIDIPMSNC INSCINKIFV LTQFNSASLN RHLARTYFGN GINFGDGFVE VLAATQTPGE AGKKWFQGTA DAVRKFLWVF
201: EDAKNRNIEN IIILSGDHLY RMNYMDFVQH HVDSKADITL SCAPVDESRA SEYGLVNIDR SGRVVHFSEK PTGIDLKSMQ TDTTMHGLSH QEAAKSPYIA
301: SMGVYCFKTE ALLKLLTWRY PSSNDFGSEI IPAAIKDHNV QGYIYRDYWE DIGTIKSFYE ANIALVEEHP KFEFYDQNTP FYTSPRFLPP TKTEKCRIVN
401: SVISHGCFLG ECSIQRSIIG ERSRLDYGVE LQDTLMLGAD SYQTESEIAS LLAEGNVPIG IGRDTKIRKC IIDKNAKIGK NVVIMNKDDV KEADRPEEGF
501: YIRSGITVVV EKATIKDGTV I

Arabidopsis Description

APL3Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178US50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.