Factsheet for VIT_07s0005g02800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96634	Soybean	plastid	71.4	69.38
KRH68365	Soybean	plastid	70.62	68.62
OQU88760	Sorghum	plastid	68.09	68.23
Os07t0243200-01	Rice	plastid	67.12	67.78
VIT_18s0001g12840.t01	Wine grape	plastid	68.87	67.56
VIT_03s0038g04570.t01	Wine grape	cytosol	65.95	64.33
Zm00001d019266_P002	Maize	plastid	64.01	63.64
VIT_05s0020g02880.t01	Wine grape	plastid	61.48	60.77
VIT_12s0057g01480.t01	Wine grape	plastid	50.0	50.49
VIT_05s0094g01500.t01	Wine grape	plastid	36.97	39.92

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100248665	wikigene:100248665	Gene3D:2.160.10.10	MapMan:3.2.2.3
Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EMBL:AM434998	ProteinID:CAN67125	ProteinID:CAN67125.1
ProteinID:CCB60084	ProteinID:CCB60084.1	UniProt:F6HZG9	EMBL:FN596502	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	EntrezGene:LOC100248665	wikigene:LOC100248665	InterPro:NTP_transferase_dom
InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809	PANTHER:PTHR43523	PANTHER:PTHR43523:SF5
SUPFAM:SSF51161	SUPFAM:SSF53448	TIGR:TC63653	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00021096F3
ArrayExpress:VIT_07s0005g02800	EnsemblPlantsGene:VIT_07s0005g02800	EnsemblPlants:VIT_07s0005g02800.t01	RefSeq:XP_002274245	RefSeq:XP_002274245.2	RefSeq:XP_010652348.1
SEG:seg	:	:	:	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:F6HZG9]

Coordinates

chr7:-:5053746..5059698

Molecular Weight (calculated)

57354.2 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.140

Length

514 amino acids

Sequence
(BLAST)

001: MQAPIYSILG SCQPTSRVHH RRRSVFRDPV VHSNSRISGN LNIWAPTKGS SAACLLADVY KDFMTLDAPE LAKPEADPKT VASIILGGGA GTRLFPLTKS
101: RAKPAVPIGG CYRLIDVPMS NCINSGINKI YILTQFNSQS LNRHIARTYN LGSGVNFGDG FVEVLAATQT SGESGKKWFQ GTADAVRQFI WLFEDARHRH
201: IENILILSGD HLYRMDYMEF VQKHIDSDAD ISVSCLPMDE SRASDFGLIK IDEMGQIRQF LEKPKGETLK SMRVDTTALG LSPVEAKKFP YIASMGIYLF
301: KTDVLLKLLR WSYPTANDFG SEVIPMAAEE CNVQAYLFNG YWEDIGTIKS FFDANLALTD QPPKFHFYDP LKPIFTSPRF LPPTKIEKCR VMDSIISHGC
401: FLRECSVEHS IVGIRSRLDY GVEMKDTMMM GADYYQTEEE IAAFLAEGKV PIGVGKGTKI MNCIIDKNAR IGKNVVITNK DKVEEADRPS EGFYIRSGIT
501: VVLKNSVIMD ETII

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.