Factsheet for VIT_12s0057g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14151	Soybean	cytosol	34.58	96.17
KRH73984	Soybean	nucleus, plastid	89.78	88.74
CDY00843	Canola	plastid	90.18	88.27
Solyc12g011120.1.1	Tomato	plastid	76.62	88.24
CDY27884	Canola	plastid	89.98	88.08
Bra015135.1-P	Field mustard	plastid	89.98	88.08
AT5G48300.1	Thale cress	plastid	89.19	87.31
CDX86314	Canola	plastid	87.82	87.13
Bra037495.1-P	Field mustard	plastid	87.43	86.91
CDY68655	Canola	plastid	87.23	86.89
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	88.02	85.99
Solyc07g056140.2.1	Tomato	plastid	88.02	85.99
KRH14152	Soybean	plastid	53.83	85.36
GSMUA_Achr1P09400_001	Banana	plastid	85.27	82.67
TraesCS7B01G183300.1	Wheat	plastid	83.3	82.49
TraesCS7D01G284900.1	Wheat	plastid	83.1	82.3
HORVU7Hr1G067620.2	Barley	plastid	82.91	82.1
Os08t0345800-02	Rice	plastid	82.91	82.1
TraesCS7A01G287400.2	Wheat	golgi, plastid	82.51	82.03
PGSC0003DMT400097320	Potato	plastid	83.3	81.7
KXG24924	Sorghum	plastid	82.91	81.62
Zm00001d032385_P001	Maize	plastid	82.91	81.62
Os09t0298200-01	Rice	plastid	79.17	80.6
TraesCS5B01G175800.1	Wheat	plastid	78.98	80.24
TraesCS5D01G182600.1	Wheat	plastid	78.78	80.04
EER98661	Sorghum	plastid	79.96	79.8
Zm00001d005546_P002	Maize	plastid	79.96	79.8
Zm00001d023256_P001	Maize	cytosol	15.72	79.21
Zm00001d050032_P003	Maize	plastid	81.53	78.9
Zm00001d025723_P001	Maize	cytosol	45.78	54.82
VIT_05s0020g02880.t01	Wine grape	plastid	51.08	50.0
VIT_07s0005g02800.t01	Wine grape	plastid	50.49	50.0
VIT_05s0094g01500.t01	Wine grape	plastid	45.38	48.53
VIT_18s0001g12840.t01	Wine grape	plastid	49.51	48.09
VIT_03s0038g04570.t01	Wine grape	cytosol	48.33	46.68

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100240927	wikigene:100240927	Gene3D:2.160.10.10	MapMan:3.2.2.3
Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	ProteinID:CBI28489	ProteinID:CBI28489.3	UniProt:D7TDB6
EMBL:FN595759	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
EntrezGene:LOC100240927	wikigene:LOC100240927	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF9	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGR:TC64615	TIGR:TC66454	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00015CA520	ArrayExpress:VIT_12s0057g01480
EnsemblPlantsGene:VIT_12s0057g01480	EnsemblPlants:VIT_12s0057g01480.t01	unigene:Vvi.7027	RefSeq:XP_002263255	RefSeq:XP_002263255.1	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:D7TDB6]

Coordinates

chr12:+:10196927..10200968

Molecular Weight (calculated)

55905.9 Da

IEP (calculated)

7.005

GRAVY (calculated)

-0.183

Length

509 amino acids

Sequence
(BLAST)

001: MASLSALGVT GVVPTSSKSR DLPSSHRTLS FSSRISGNKI TWKASLGSHR RAPVIVSPKA VSDSRNSQTC LDPDASRSVL GIILGGGAGT RLYPLTKKRA
101: KPAVPLGANY RLIDIPVSNC LNSNISKIYV LTQFNSASLN RHLSRAYASN MGGYKNEGFV EVLAAQQSPE NPNWFQGTAD AVRQYLWLFE EHNVLEFLVL
201: AGDHLYRMDY ERFIQAHRET DADITVAALP MDEKRATAFG LMKIDEEGRI IEFAEKPKGE QLKAMKVDTT ILGLDDERAK EMPYIASMGI YVVSKDVMLD
301: LLRDQFPGAN DFGSEVIPGA TSLGLRVQAY LYDGYWEDIG TIEAFYNANL GITKKPVPDF SFYDRSSPIY TQPRYLPPSK MLDADVTDSV IGEGCVIKNC
401: KIHHSVVGLR SCISEGAIIE DTLLMGADYY ETDADRRFLM AKGSVPIGIG KNSHIKRAII DKNARIGDNV KIINSDNVQE AARETDGYFI KSGIVTVIKD
501: ALLPSGTII

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.