Factsheet for Solyc12g011120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14151	Soybean	cytosol	36.43	87.98
PGSC0003DMT400097320	Potato	plastid	94.34	80.35
VIT_12s0057g01480.t01	Wine grape	plastid	88.24	76.62
KRH73984	Soybean	nucleus, plastid	88.24	75.73
CDY68655	Canola	plastid	87.33	75.54
Solyc07g056140.2.1	Tomato	plastid	88.91	75.43
Bra037495.1-P	Field mustard	plastid	87.33	75.39
CDX86314	Canola	plastid	87.33	75.24
Os09t0298200-01	Rice	plastid	84.39	74.6
Bra015135.1-P	Field mustard	plastid	87.56	74.42
AT5G48300.1	Thale cress	plastid	87.56	74.42
CDY00843	Canola	plastid	87.56	74.42
CDY27884	Canola	plastid	87.56	74.42
Zm00001d023256_P001	Maize	cytosol	16.97	74.26
TraesCS7A01G287400.2	Wheat	golgi, plastid	85.97	74.22
TraesCS7B01G183300.1	Wheat	plastid	86.2	74.12
TraesCS7D01G284900.1	Wheat	plastid	86.2	74.12
Os08t0345800-02	Rice	plastid	85.97	73.93
HORVU7Hr1G067620.2	Barley	plastid	85.97	73.93
TraesCS5D01G182600.1	Wheat	plastid	83.03	73.25
Zm00001d032385_P001	Maize	plastid	85.52	73.11
TraesCS5B01G175800.1	Wheat	plastid	82.81	73.05
KXG24924	Sorghum	plastid	85.29	72.92
GSMUA_Achr1P09400_001	Banana	plastid	85.75	72.19
EER98661	Sorghum	plastid	83.03	71.96
Zm00001d005546_P002	Maize	plastid	83.03	71.96
Zm00001d050032_P003	Maize	plastid	84.62	71.1
KRH14152	Soybean	plastid	49.09	67.6
Zm00001d025723_P001	Maize	cytosol	48.19	50.12
Solyc01g079790.2.1	Tomato	nucleus, plastid	57.47	49.32
Solyc07g019440.2.1	Tomato	plastid	54.98	46.91
Solyc01g109790.2.1	Tomato	extracellular	53.62	45.23
Solyc08g015670.2.1	Tomato	plastid	45.93	43.75

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase
InterPro:ADP_Glu_pyroP_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
UniProt:K4DCJ8	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809
ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF9	SUPFAM:SSF51161	SUPFAM:SSF53448	EnsemblPlantsGene:Solyc12g011120.1
EnsemblPlants:Solyc12g011120.1.1	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000276A189	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:K4DCJ8]

Coordinates

chr12:-:3966574..3969444

Molecular Weight (calculated)

48972.8 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.124

Length

442 amino acids

Sequence
(BLAST)

001: MQCFVQLCDN SVLGIILGGG AGTRLYPLTK KRAKPAVPLG ANYRLIDIPV SNCINSTISK IYVLTQFNSA SLNRHLSRAY ASNMGSHKNE GFVEVLAAQQ
101: SPENPDWFQG TADAVRQYLW LFEEHNVLEF LILAGDHLYR MDYEKFIQAH REAGADITVA ALPMDEKRAS SFGLMKIDEE GRIIEFAEKP DGEQLKEMKV
201: DTTILGLDDE RAKENPYIAS MGIYVISKDV MINLLRQSFP AANDFGSEVI PGATSIGMRV QAYLFDGYWE DIGTIEAFYN ANLGITKKPV PDFSFYDRSA
301: PIYTQPRYLP PSKMLDADIT DSVIGEGCVT KNCKIHHSVI GLRSCISEGT IIEDTLLMGA DYYETNDDKL LLYAKGSVPI GIGKNCHIKK AIIDKNARIG
401: DNVKIINIDN IQEAARESDG YFIKSGIVTV IRDAVIPNGT II

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.