Factsheet for Os08t0345800-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 17406793

plastid: 17189339
plasma membrane: 27800704
plastid: 27992503

gfp PMID: 17406793 doi

SK Lee, SK Hwang, M Han, JS Eom, HG Kang, Y Han, SB Choi, MH Cho, SH Bhoo, G An, TR Hahn, TW Okita, JS Jeon

Graduate School of Biotechnology & Plant Metabolism Research Center, Kyung Hee University, Yongin 446-701, Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14151	Soybean	cytosol	32.49	91.26
TraesCS7B01G183300.1	Wheat	plastid	90.08	90.08
TraesCS7D01G284900.1	Wheat	plastid	90.08	90.08
HORVU7Hr1G067620.2	Barley	plastid	89.88	89.88
TraesCS7A01G287400.2	Wheat	golgi, plastid	89.49	89.84
KXG24924	Sorghum	plastid	89.49	88.97
Zm00001d032385_P001	Maize	plastid	88.91	88.39
Zm00001d050032_P003	Maize	plastid	88.33	86.31
Solyc12g011120.1.1	Tomato	plastid	73.93	85.97
Os09t0298200-01	Rice	plastid	83.46	85.8
CDX86314	Canola	plastid	82.88	83.04
CDY68655	Canola	plastid	82.49	82.97
VIT_12s0057g01480.t01	Wine grape	plastid	82.1	82.91
Solyc07g056140.2.1	Tomato	plastid	83.85	82.73
KRH73984	Soybean	nucleus, plastid	82.88	82.72
Bra037495.1-P	Field mustard	plastid	82.3	82.62
Bra015135.1-P	Field mustard	plastid	83.27	82.31
CDY27884	Canola	plastid	83.27	82.31
CDY00843	Canola	plastid	83.27	82.31
Zm00001d023256_P001	Maize	cytosol	16.15	82.18
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	83.27	82.15
AT5G48300.1	Thale cress	plastid	82.3	81.35
GSMUA_Achr1P09400_001	Banana	plastid	80.54	78.86
KRH14152	Soybean	plastid	48.64	77.88
PGSC0003DMT400097320	Potato	plastid	78.6	77.84
Zm00001d025723_P001	Maize	cytosol	46.89	56.71
Os03t0735000-01	Rice	plastid	49.61	49.9
Os07t0243200-01	Rice	plastid	48.05	48.53
Os01t0633100-01	Rice	plastid	42.61	42.28
Os05t0580000-01	Rice	plastid	42.22	41.81

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	EntrezGene:4345339
ProteinID:AAA33891.1	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EMBL:AF378188	EMBL:AK071826	EMBL:AK103906
ProteinID:BAC75439.1	ProteinID:BAD01700.1	ProteinID:BAF23517.1	ProteinID:BAT05034.1	ProteinID:BAT05035.1	EMBL:D83539
ProteinID:EAZ42414.1	EMBL:EF122437	EMBL:FJ940194	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0005978	GO:GO:0005982	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	EMBL:J04960
InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	EnsemblPlantsGene:Os08g0345800	EnsemblPlants:Os08t0345800-02	UniProt:P15280	PFAM:PF00483
ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF7	SUPFAM:SSF51161
SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000021F8A0	RefSeq:XP_015650970.1	RefSeq:XP_015650971.1
SEG:seg	:	:	:	:	:

Description

ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2Similar to Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase). (Os08t0345800-01);Similar to Glucose-1-phosphate adenylyltransferase. (Os08t0345800-02);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-03);Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-04)

Coordinates

chr8:-:15666336..15671051

Molecular Weight (calculated)

56107.3 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.159

Length

514 amino acids

Sequence
(BLAST)

001: MAMAAAMGVA SPYHAAHAAA STSCDSLRLL VAEGRPRRPR GVASSSSSSS SAGRRRRPLV FSPRAVSDSK SSQTCLDPDA STSVLGIILG GGAGTRLYPL
101: TKKRAKPAVP LGANYRLIDI PVSNCLNSNI SKIYVLTQFN SASLNRHLSR AYGNNIGGYK NEGFVEVLAA QQSPDNPNWF QGTADAVRQY LWLFEEHNVM
201: EFLILAGDHL YRMDYEKFIQ AHRETDSDIT VAALPMDEKR ATAFGLMKID EEGRIVEFAE KPKGEQLKAM MVDTTILGLD DVRAKEMPYI ASMGIYVISK
301: NVMLQLLREQ FPGANDFGSE VIPGATNIGM RVQAYLYDGY WEDIGTIEAF YNANLGITKK PVPDFSFYDR SAPIYTQPRH LPPSKVLDAD VTDSVIGEGC
401: VIKNCKIHHS VVGLRSCISE GAIIEDSLLM GADYYETEAD KKLLGEKGGI PIGIGKNCHI RRAIIDKNAR IGDNVKIINV DNVQEAARET DGYFIKSGIV
501: TVIKDALLPS GTVI

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.