Factsheet for PGSC0003DMT400097320

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011120.1.1	Tomato	plastid	80.35	94.34
KRH14151	Soybean	cytosol	31.02	87.98
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	85.36	85.03
VIT_12s0057g01480.t01	Wine grape	plastid	81.7	83.3
KRH73984	Soybean	nucleus, plastid	82.08	82.72
CDY68655	Canola	plastid	81.12	82.39
Bra015135.1-P	Field mustard	plastid	82.27	82.12
CDY27884	Canola	plastid	82.27	82.12
Bra037495.1-P	Field mustard	plastid	80.92	82.03
CDX86314	Canola	plastid	80.92	81.87
CDY00843	Canola	plastid	81.89	81.73
AT5G48300.1	Thale cress	plastid	81.5	81.35
HORVU7Hr1G067620.2	Barley	plastid	78.23	78.99
TraesCS7D01G284900.1	Wheat	plastid	78.23	78.99
TraesCS7B01G183300.1	Wheat	plastid	78.23	78.99
TraesCS7A01G287400.2	Wheat	golgi, plastid	77.65	78.71
Os08t0345800-02	Rice	plastid	77.84	78.6
KRH14152	Soybean	plastid	48.55	78.5
Os09t0298200-01	Rice	plastid	75.14	78.0
GSMUA_Achr1P09400_001	Banana	plastid	78.61	77.71
Zm00001d032385_P001	Maize	plastid	77.07	77.37
KXG24924	Sorghum	plastid	76.88	77.18
TraesCS5D01G182600.1	Wheat	plastid	73.99	76.65
TraesCS5B01G175800.1	Wheat	plastid	73.8	76.45
Zm00001d005546_P002	Maize	plastid	74.18	75.49
EER98661	Sorghum	plastid	73.99	75.29
Zm00001d023256_P001	Maize	cytosol	14.64	75.25
Zm00001d050032_P003	Maize	plastid	76.11	75.1
Zm00001d025723_P001	Maize	cytosol	42.39	51.76
PGSC0003DMT400023304	Potato	cytosol, plastid	50.87	51.26
PGSC0003DMT400041215	Potato	plastid	48.36	48.18
PGSC0003DMT400064936	Potato	cytosol	14.26	47.44
PGSC0003DMT400001935	Potato	plastid	43.35	45.0

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:102592916	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10
InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252
InterPro:IPR029044	UniProt:M1E0D4	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	EnsemblPlantsGene:PGSC0003DMG400046891
PGSC:PGSC0003DMG400046891	EnsemblPlants:PGSC0003DMT400097320	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523
PANTHER:PTHR43523:SF9	SUPFAM:SSF51161	SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0002958437
RefSeq:XP_006350010.1	SEG:seg	:	:	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400046891]

Coordinates

chr12:+:1226599..1230218

Molecular Weight (calculated)

57226.5 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.119

Length

519 amino acids

Sequence
(BLAST)

001: MAASIGTLKP FQHSIIDNVD SAMSFQSLSF ASSHLSSGKL ISPKSLRSRR FISNKNAYHS RAAIIVSPKA VSDSSNSQTC LDPEASRSVL GIILGGGAGT
101: RLYPLTKKRA KPAVPLGANY RLIDIPVSNC INSTISKIYV LTQFNSASLN RHLSRAYASN MGSYKNEGFV EVLAAQQSPE NPDWFQGTAD AVRQYLWLFE
201: EHNVLEFLIL AGDHLYRMDY EKFILAHREA DADITVAALP MDEKRASSFG LMKIDEEGRI IEFAEKPNGE QLKEMQVDTT ILGLDDERAK ENPYIASMGI
301: YVISKDVMLN LLRQSFPAAN DFGSEVIPGA TSIGMRVQAY LFDDYWEDIG TIEAFYNANL GITKKPVPDF SFYDRSAPIY TQPRYLPPSK MLDTDITDSV
401: IGEGCVIKNC KIHHSVIGLR SCISAGTIIE DTLLMGADYY ETNDDKMLLY AKGSVPIGIG KNCHIKRAII DKNARIGDNV KIINIDNIQE VAREADGYFI
501: KSGIVTVIKD AVIPSGTII

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.