Factsheet for PGSC0003DMT400023304

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079790.2.1	Tomato	nucleus, plastid	98.06	98.06
VIT_05s0020g02880.t01	Wine grape	plastid	81.94	81.15
Bra002221.1-P	Field mustard	plastid	80.39	80.23
CDX92546	Canola	plastid	80.39	80.23
CDY68209	Canola	plastid	80.19	80.04
CDY02573	Canola	plastid	79.61	79.46
KRH51050	Soybean	nucleus, plastid	79.61	78.85
Bra023713.1-P	Field mustard	plastid	78.83	78.68
AT5G19220.1	Thale cress	plastid	79.22	78.16
KRH02097	Soybean	nucleus, plastid	79.22	78.01
CDY47206	Canola	plastid	79.03	75.23
Os03t0735000-01	Rice	plastid	73.59	74.17
TraesCS5B01G484700.1	Wheat	plastid	71.65	73.51
EER90919	Sorghum	plastid	72.23	73.37
TraesCS5D01G484500.2	Wheat	plastid	71.26	72.67
TraesCS5A01G472000.1	Wheat	plastid	71.07	72.48
GSMUA_Achr1P11820_001	Banana	plastid	75.34	71.45
Zm00001d033910_P002	Maize	plastid	72.04	70.8
HORVU0Hr1G033200.1	Barley	plastid	37.28	65.08
HORVU1Hr1G001590.2	Barley	plastid	25.05	61.72
HORVU7Hr1G093330.2	Barley	plastid	29.32	61.63
PGSC0003DMT400041215	Potato	plastid	61.36	60.65
PGSC0003DMT400001935	Potato	plastid	56.5	58.2
HORVU4Hr1G025240.1	Barley	plastid	26.02	52.96
PGSC0003DMT400097320	Potato	plastid	51.26	50.87
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	51.26	50.67
PGSC0003DMT400064936	Potato	cytosol	12.23	40.38

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase
InterPro:ADP_Glu_pyroP_CS	ProteinID:CAA53741	ProteinID:CAA53741.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	UniProt:M1AI49
InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	EnsemblPlantsGene:PGSC0003DMG400009026	PGSC:PGSC0003DMG400009026	EnsemblPlants:PGSC0003DMT400023304
ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF8	SUPFAM:SSF51161
SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0002960065	EMBL:X76136	:

Description

Glucose-1-phosphate adenylyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400009026]

Coordinates

chr1:-:62144768..62149133

Molecular Weight (calculated)

56755.1 Da

IEP (calculated)

8.853

GRAVY (calculated)

-0.169

Length

515 amino acids

Sequence
(BLAST)

001: MSVAADGRFA LLHSNPAALT GRNLKVVKFC NGELMGKKLK YTKFQLRSNV VKPNICMSLT TDIAGEAKLK DLEAKKGDAR TVVAIILGGG AGTRLFPLTK
101: RRAKPAVPMG GAYRLIDVPM SNCINSGINK VYILTQFNSA SLNRHIARAY NFGNGVTFGD GYVEVLAATQ TPGELGKRWF QGTADAVRQF HWLFEDARSK
201: DIEDVLILSG DHLYRMDYLH FVQSHRQSGA DITISSLPID DSRASDFGLM KIDDTGRVMS FSEKPKGDDL KAMAVDTTVL GLSPEEAKEK PYIASMGVYV
301: FKKDILLNLL RWRFPTANDF GSEIIPASTK EFCVKAYLFN DYWEDIGTIR SFFRANLALT EHPPRFSFYD ATKPIYTSRR NLPPSAIDNS KIVDSIVSHG
401: SFLTNCFVEH SVVGIRSRIG TNVHLKDTVM LGADYYETDA EIASQLAEGK VPLGIGENTR IKDCIIDKNA RIGKNVVIAN SEGVQEADRS SEGFYIRSGI
501: TVISKNSTIP DGTVI

Best Arabidopsis Sequence Match ( AT5G19220.1 )
(BLAST)

001: MVVSADCRIS LSAPSCIRSS STGLTRHIKL GSFCNGELMG KKLNLSQLPN IRLRSSTNFS QKRILMSLNS VAGESKVQEL ETEKRDPRTV ASIILGGGAG
101: TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQYNSASL NRHLARAYNS NGLGFGDGYV EVLAATQTPG ESGKRWFQGT ADAVRQFHWL
201: FEDARSKDIE DVLILSGDHL YRMDYMDFIQ DHRQSGADIS ISCIPIDDRR ASDFGLMKID DKGRVISFSE KPKGDDLKAM AVDTTILGLS KEEAEKKPYI
301: ASMGVYVFKK EILLNLLRWR FPTANDFGSE IIPFSAKEFY VNAYLFNDYW EDIGTIRSFF EANLALTEHP GAFSFYDAAK PIYTSRRNLP PSKIDNSKLI
401: DSIISHGSFL TNCLIEHSIV GIRSRVGSNV QLKDTVMLGA DYYETEAEVA ALLAEGNVPI GIGENTKIQE CIIDKNARVG KNVIIANSEG IQEADRSSDG
501: FYIRSGITVI LKNSVIKDGV VI

Arabidopsis Description

ADG2Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55229]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.