CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51050	Soybean	nucleus, plastid	97.13	97.69
VIT_05s0020g02880.t01	Wine grape	plastid	82.79	83.27
PGSC0003DMT400023304	Potato	cytosol, plastid	78.01	79.22
Solyc01g079790.2.1	Tomato	nucleus, plastid	78.01	79.22
CDY02573	Canola	plastid	77.44	78.49
Bra002221.1-P	Field mustard	plastid	77.25	78.29
CDY68209	Canola	plastid	77.25	78.29
CDX92546	Canola	plastid	77.25	78.29
Bra023713.1-P	Field mustard	plastid	77.06	78.1
AT5G19220.1	Thale cress	plastid	77.82	77.97
CDY47206	Canola	plastid	77.25	74.68
GSMUA_Achr1P11820_001	Banana	plastid	76.1	73.3
EER90919	Sorghum	plastid	70.75	72.98
TraesCS5B01G484700.1	Wheat	plastid	69.41	72.31
Os03t0735000-01	Rice	plastid	70.55	72.21
TraesCS5A01G472000.1	Wheat	plastid	69.22	71.68
TraesCS5D01G484500.2	Wheat	plastid	69.02	71.49
Zm00001d033910_P002	Maize	plastid	69.79	69.66
HORVU0Hr1G033200.1	Barley	plastid	35.37	62.71
HORVU1Hr1G001590.2	Barley	plastid	25.05	62.68
KRH61137	Soybean	plastid	60.8	60.0
HORVU7Hr1G093330.2	Barley	plastid	28.11	60.0
KRH51829	Soybean	plastid	60.04	59.13
KRH51516	Soybean	plastid	57.74	58.19
KRH60824	Soybean	plastid	57.74	58.19
KRH15167	Soybean	mitochondrion, plastid	57.17	57.17
KRG96634	Soybean	plastid	57.74	57.09
KRH05853	Soybean	plastid	56.98	56.87
KRH24456	Soybean	plastid	57.17	56.63
KRH29435	Soybean	cytosol	56.98	56.23
KRH68365	Soybean	plastid	56.21	55.58
HORVU4Hr1G025240.1	Barley	plastid	25.62	52.96
KRH14152	Soybean	plastid	31.93	52.02
KRH14151	Soybean	cytosol	17.97	51.37
KRH73984	Soybean	nucleus, plastid	50.29	51.07

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100792088	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10
UniProt:A0A0R0F6M9	EMBL:ACUP02010293	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EnsemblPlantsGene:GLYMA_17G015600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	EnsemblPlants:KRH02097	ProteinID:KRH02097
ProteinID:KRH02097.1	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809
ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF8	MetaCyc:PWY-622	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001B64166	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:1171092..1176961

Molecular Weight (calculated)

58150.6 Da

IEP (calculated)

8.518

GRAVY (calculated)

-0.240

Length

523 amino acids

Sequence
(BLAST)

001: MAASAGGQIT LSSTVQLHGV ACSRNWKLVK FCNGEVMGRK LVLKSAYGGS TKDVRHHQQQ QHICMSLTAD VSTESKLRDL DMERRNPRTV LAVILGGGAG
101: TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQFNSASL NRHIARAYNS GNGVTFGDGY VEVLAATQTP GEAGKKWFQG TADAVRQFHW
201: LFEDPRSKDI EDVLILSGDH LYRMDYMDFV QNHRESGADI TLSCLPMDDS RASDFGLMRI DNKGRILSFS EKPKGEELKA MQVDTTVLGL SKDEAQKKPY
301: IASMGVYVFK KEILLNLLRW RFPTANDFGS EVIPASAREF YMKAYLFNDY WEDIGTIRSF FEANLALTEH PPRFSFYDAA KPMYTSRRNL PPSKIDNSKI
401: VDSIISHGSF LNNSFIEHSV VGIRSRINSN VHLKDTVMLG ADYYETDAEV VALLAEGRVP IGIGENTKIK DCIIDKNARI GKNVVIANSE GIQEADRSSE
501: GFYIRSGVTI VLKNSVIEDG FII

Best Arabidopsis Sequence Match ( AT5G19220.1 )
(BLAST)

001: MVVSADCRIS LSAPSCIRSS STGLTRHIKL GSFCNGELMG KKLNLSQLPN IRLRSSTNFS QKRILMSLNS VAGESKVQEL ETEKRDPRTV ASIILGGGAG
101: TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQYNSASL NRHLARAYNS NGLGFGDGYV EVLAATQTPG ESGKRWFQGT ADAVRQFHWL
201: FEDARSKDIE DVLILSGDHL YRMDYMDFIQ DHRQSGADIS ISCIPIDDRR ASDFGLMKID DKGRVISFSE KPKGDDLKAM AVDTTILGLS KEEAEKKPYI
301: ASMGVYVFKK EILLNLLRWR FPTANDFGSE IIPFSAKEFY VNAYLFNDYW EDIGTIRSFF EANLALTEHP GAFSFYDAAK PIYTSRRNLP PSKIDNSKLI
401: DSIISHGSFL TNCLIEHSIV GIRSRVGSNV QLKDTVMLGA DYYETEAEVA ALLAEGNVPI GIGENTKIQE CIIDKNARVG KNVIIANSEG IQEADRSSDG
501: FYIRSGITVI LKNSVIKDGV VI

Arabidopsis Description

ADG2Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55229]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.