CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14151	Soybean	cytosol	35.53	100.0
KRH14152	Soybean	plastid	59.61	95.64
VIT_12s0057g01480.t01	Wine grape	plastid	88.74	89.78
CDY00843	Canola	plastid	89.71	88.85
Bra015135.1-P	Field mustard	plastid	89.51	88.65
CDY27884	Canola	plastid	89.51	88.65
Solyc12g011120.1.1	Tomato	plastid	75.73	88.24
CDY68655	Canola	plastid	86.6	87.28
CDX86314	Canola	plastid	86.6	86.94
AT5G48300.1	Thale cress	plastid	87.77	86.92
Bra037495.1-P	Field mustard	plastid	86.21	86.72
Solyc07g056140.2.1	Tomato	plastid	87.18	86.18
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	86.6	85.6
TraesCS7B01G183300.1	Wheat	plastid	83.88	84.05
TraesCS7D01G284900.1	Wheat	plastid	83.69	83.85
TraesCS7A01G287400.2	Wheat	golgi, plastid	83.11	83.59
HORVU7Hr1G067620.2	Barley	plastid	83.11	83.27
Zm00001d032385_P001	Maize	plastid	83.3	82.98
Os08t0345800-02	Rice	plastid	82.72	82.88
Os09t0298200-01	Rice	plastid	80.39	82.8
KXG24924	Sorghum	plastid	83.11	82.79
GSMUA_Achr1P09400_001	Banana	plastid	84.27	82.67
PGSC0003DMT400097320	Potato	plastid	82.72	82.08
TraesCS5B01G175800.1	Wheat	plastid	79.22	81.44
TraesCS5D01G182600.1	Wheat	plastid	79.03	81.24
Zm00001d005546_P002	Maize	plastid	79.81	80.59
Zm00001d050032_P003	Maize	plastid	82.14	80.42
EER98661	Sorghum	plastid	79.61	80.39
Zm00001d023256_P001	Maize	cytosol	15.15	77.23
Zm00001d025723_P001	Maize	cytosol	45.44	55.06
KRH51050	Soybean	nucleus, plastid	51.07	50.58
KRH02097	Soybean	nucleus, plastid	51.07	50.29
KRH61137	Soybean	plastid	50.87	49.43
KRH51829	Soybean	plastid	50.87	49.34
KRH51516	Soybean	plastid	48.74	48.36
KRG96634	Soybean	plastid	49.51	48.2
KRH68365	Soybean	plastid	49.13	47.83
KRH60824	Soybean	plastid	47.96	47.59
KRH24456	Soybean	plastid	48.74	47.54
KRH29435	Soybean	cytosol	48.16	46.79
KRH15167	Soybean	mitochondrion, plastid	47.38	46.65
KRH05853	Soybean	plastid	46.8	45.99

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100790187	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10
EMBL:ACUP02001292	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EnsemblPlantsGene:GLYMA_02G304500	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0019252	UniProt:I1JJP2	InterPro:IPR029044	EnsemblPlants:KRH73984	ProteinID:KRH73984
ProteinID:KRH73984.1	ProteinID:KRH73985.1	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF9	MetaCyc:PWY-622	SUPFAM:SSF51161
SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000170AD46	:	:

Description

hypothetical protein

Coordinates

chr2:+:47950037..47954106

Molecular Weight (calculated)

56350.4 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.163

Length

515 amino acids

Sequence
(BLAST)

001: MASMAAIGSL NVPCSASSRS SNVGRKSFPR SLSFSASQLC GDKIHTDSVS FAPKIGRNPV IVTPKAVSDS QNSQTCLDPD ASRSVLGIIL GGGAGTRLYP
101: LTKKRAKPAV PLGANYRLID IPVSNCLNSN VSKIYVLTQF NSASLNRHLS RAYASNMGGY KNEGFVEVLA AQQSPENPNW FQGTADAVRQ YLWLFEEHNV
201: LEFLVLAGDH LYRMDYEKFI QAHRETDADI TVAALPMDEK RATAFGLMKI DEEGRIIEFA EKPKGEQLKA MKVDTTILGL DDERAKELPY IASMGIYVVS
301: KNVMLDLLRE KFPGANDFGS EVIPGATSIG MRVQAYLYDG YWEDIGTIEA FYNANLGITK KPVPDFSFYD RSSPIYTQPR YLPPSKMLDA DVTDSVIGEG
401: CVIKNCKIHH SVVGLRSCIS EGAIIEDTLL MGADYYETEA DKRFLAAKGS VPIGIGRNSH IKRAIIDKNA RIGENVKIIN SDNVQEAARE TDGYFIKSGI
501: VTVIKDALIP SGTVI

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.