Factsheet for Os09t0298200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17406793

plastid: 27992503

gfp PMID: 17406793 doi

SK Lee, SK Hwang, M Han, JS Eom, HG Kang, Y Han, SB Choi, MH Cho, SH Bhoo, G An, TR Hahn, TW Okita, JS Jeon

Graduate School of Biotechnology & Plant Metabolism Research Center, Kyung Hee University, Yongin 446-701, Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G175800.1	Wheat	plastid	91.4	91.22
TraesCS5D01G182600.1	Wheat	plastid	91.0	90.82
Zm00001d005546_P002	Maize	plastid	90.8	89.02
EER98661	Sorghum	plastid	90.8	89.02
KRH14151	Soybean	cytosol	31.8	86.89
Solyc12g011120.1.1	Tomato	plastid	74.6	84.39
Os08t0345800-02	Rice	plastid	85.8	83.46
KRH73984	Soybean	nucleus, plastid	82.8	80.39
CDY68655	Canola	plastid	81.0	79.26
VIT_12s0057g01480.t01	Wine grape	plastid	80.6	79.17
CDX86314	Canola	plastid	81.2	79.14
Bra037495.1-P	Field mustard	plastid	81.0	79.1
AT5G48300.1	Thale cress	plastid	81.2	78.08
CDY00843	Canola	plastid	81.2	78.08
Bra015135.1-P	Field mustard	plastid	81.0	77.88
CDY27884	Canola	plastid	81.0	77.88
Solyc07g056140.2.1	Tomato	plastid	80.8	77.54
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	80.2	76.97
GSMUA_Achr1P09400_001	Banana	plastid	80.8	76.95
KRH14152	Soybean	plastid	48.8	76.01
PGSC0003DMT400097320	Potato	plastid	78.0	75.14
Os03t0735000-01	Rice	plastid	51.0	49.9
Os07t0243200-01	Rice	plastid	49.6	48.72
Os01t0633100-01	Rice	plastid	45.0	43.44
Os05t0580000-01	Rice	plastid	44.2	42.58

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	EntrezGene:4346656
ProteinID:ACY56058.1	ProteinID:ACY56059.1	ProteinID:ACY56060.1	ProteinID:ACY56061.1	ProteinID:ACY56063.1	InterPro:ADP-Glc_PPase
InterPro:ADP_Glu_pyroP_CS	EMBL:AK060270	EMBL:AK073146	ProteinID:BAD32986.1	ProteinID:BAD33225.1	ProteinID:BAF24722.1
ProteinID:BAT07326.1	ProteinID:EEE69398.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0019252	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	EnsemblPlantsGene:Os09g0298200	EnsemblPlants:Os09t0298200-01
PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF7
UniProt:Q69T99	SUPFAM:SSF51161	SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00003FF2D0
RefSeq:XP_015612224.1	SEG:seg	:	:	:	:

Description

ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1Similar to Brittle 2. (Os09t0298200-01);Similar to Brittle 2. (Os09t0298200-02)

Coordinates

chr9:-:7245434..7249813

Molecular Weight (calculated)

54847.8 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.133

Length

500 amino acids

Sequence
(BLAST)

001: MAMMAMGAAS WAPIPAPARA AAAFYPGRDL AAARRRRGAA ARRPFVFTPR AVSDSRSSQT CLDPDASTSV LGIILGGGAG TRLYPLTKKR AKPAVPLGAN
101: YRLIDIPVSN CLNSNVSKIY VLTQFNSASL NRHLSRAYGN NIGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF EEHNVMEFLI LAGDHLYRMD
201: YQKFIQAHRE TNADITVAAL PMDEERATAF GLMKIDDEGR IIEFAEKPKG EKLKSMMVDT TILGLDTERA KELPYIASMG IYVFSKDVML KLLRQNFPAA
301: NDFGSEVIPG ATEIGMRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAAI YTQPRYLPPS KVLDADVTDS VIGEGCVIRH CTINHSVVGL
401: RSCISEGAVI EDSLLMGADY YETETDKKAL SETGGIPIGI GKNAHIRKAI IDKNARIGEN VKIINVDNIQ EASRETDGYF IKSGIVTVIK DALIPSGTVI

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.