CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005546_P002	Maize	plastid	96.86	96.86
Os09t0298200-01	Rice	plastid	89.02	90.8
TraesCS5B01G175800.1	Wheat	plastid	87.45	89.02
TraesCS5D01G182600.1	Wheat	plastid	87.25	88.82
KRH14151	Soybean	cytosol	31.37	87.43
Solyc12g011120.1.1	Tomato	plastid	71.96	83.03
KXG24924	Sorghum	plastid	83.33	82.2
VIT_12s0057g01480.t01	Wine grape	plastid	79.8	79.96
KRH73984	Soybean	nucleus, plastid	80.39	79.61
CDX86314	Canola	plastid	80.0	79.53
Bra037495.1-P	Field mustard	plastid	79.8	79.49
CDY68655	Canola	plastid	79.61	79.45
CDY00843	Canola	plastid	79.61	78.08
CDY27884	Canola	plastid	79.41	77.88
Bra015135.1-P	Field mustard	plastid	79.41	77.88
AT5G48300.1	Thale cress	plastid	79.41	77.88
Solyc07g056140.2.1	Tomato	plastid	78.43	76.78
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	78.24	76.58
GSMUA_Achr1P09400_001	Banana	plastid	77.65	75.43
KRH14152	Soybean	plastid	47.06	74.77
PGSC0003DMT400097320	Potato	plastid	75.29	73.99
OQU88760	Sorghum	plastid	50.0	49.71
EER90919	Sorghum	plastid	48.43	48.72
OQU87201	Sorghum	plastid	43.73	43.13
OQU78492	Sorghum	plastid	43.92	32.99

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	EntrezGene:8064663
InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	UniProt:C5X8X7	EnsemblPlants:EER98661	ProteinID:EER98661	ProteinID:EER98661.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	InterPro:NTP_transferase_dom
InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523
PANTHER:PTHR43523:SF7	MetaCyc:PWY-622	EnsemblPlantsGene:SORBI_3002G160400	SUPFAM:SSF51161	SUPFAM:SSF53448	unigene:Sbi.1779
TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001A83C57	RefSeq:XP_002462140.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:49529396..49534320

Molecular Weight (calculated)

56015.2 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.153

Length

510 amino acids

Sequence
(BLAST)

001: MATAMGALAA TSLTPVPAAA TFPGDLGLGR RRAAVSGWRA GGRRLRASPP ARRPFLFSPR GVSDSRSSQT CLDPDASTSV LGIILGGGAG TRLYPLTKKR
101: AKPAVPLRAN YRLIDIPVSN CLNSNVSKIY VLTQFNSASL NRHLSRAYGN NIAGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYMWLF EEHNIMEFLI
201: LAGDHLYRMD YQKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDDEGR IVEFAEKPKG EKLRSMMVDT TILGLDPERA KELPYIASMG IYVFSKDVML
301: RLLRENFPAA NDFGSEVIPG ATEIGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KVLDADVTDS VIGEGCVIKH
401: CTINHSVVGL RSCISEGAVI EDSLLMGADY YETEDDKKVL SENGGIPIGI GKNAHIRKAI IDKNARIGEN VKIINFDNVQ EAVRETEGYF IKSGIVTVIK
501: DALIPSGTII

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.