Factsheet for Solyc07g056140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	98.66	98.66
KRH14151	Soybean	cytosol	33.01	93.99
Solyc12g011120.1.1	Tomato	plastid	75.43	88.91
VIT_12s0057g01480.t01	Wine grape	plastid	85.99	88.02
Bra015135.1-P	Field mustard	plastid	87.52	87.69
CDY27884	Canola	plastid	87.52	87.69
CDY00843	Canola	plastid	87.33	87.5
CDY68655	Canola	plastid	85.8	87.48
KRH73984	Soybean	nucleus, plastid	86.18	87.18
CDX86314	Canola	plastid	85.6	86.94
Bra037495.1-P	Field mustard	plastid	85.22	86.72
AT5G48300.1	Thale cress	plastid	86.37	86.54
TraesCS7B01G183300.1	Wheat	plastid	82.92	84.05
Os08t0345800-02	Rice	plastid	82.73	83.85
TraesCS7D01G284900.1	Wheat	plastid	82.73	83.85
KRH14152	Soybean	plastid	51.63	83.8
HORVU7Hr1G067620.2	Barley	plastid	82.53	83.66
TraesCS7A01G287400.2	Wheat	golgi, plastid	82.15	83.59
GSMUA_Achr1P09400_001	Banana	plastid	83.49	82.86
Zm00001d032385_P001	Maize	plastid	81.0	81.62
KXG24924	Sorghum	plastid	81.0	81.62
Os09t0298200-01	Rice	plastid	77.54	80.8
TraesCS5B01G175800.1	Wheat	plastid	76.97	80.04
TraesCS5D01G182600.1	Wheat	plastid	76.97	80.04
Zm00001d050032_P003	Maize	plastid	80.23	79.47
Zm00001d005546_P002	Maize	plastid	76.97	78.63
EER98661	Sorghum	plastid	76.78	78.43
Zm00001d023256_P001	Maize	cytosol	14.78	76.24
Zm00001d025723_P001	Maize	cytosol	44.34	54.35
Solyc01g079790.2.1	Tomato	nucleus, plastid	50.67	51.26
Solyc07g019440.2.1	Tomato	plastid	47.79	48.07
Solyc01g109790.2.1	Tomato	extracellular	46.26	45.99
Solyc08g015670.2.1	Tomato	plastid	40.12	45.04

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	InterPro:ADP-Glc_PPase
InterPro:ADP_Glu_pyroP_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044
UniProt:K4CGE7	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809
ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF9	SUPFAM:SSF51161	SUPFAM:SSF53448	EnsemblPlantsGene:Solyc07g056140.2
EnsemblPlants:Solyc07g056140.2.1	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000276AE6D	SEG:seg	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:K4CGE7]

Coordinates

chr7:-:63989209..63993821

Molecular Weight (calculated)

57295.6 Da

IEP (calculated)

7.234

GRAVY (calculated)

-0.199

Length

521 amino acids

Sequence
(BLAST)

001: MAASIGALKS SPSSHNCINE RRNDSTRAIS SRNLSFSSSH LAGDKLMPVS SLRSQGVRFN VRRSPLIVSP KAVSDSQNSQ TCLDPDASRS VLGIILGGGA
101: GTRLYPLTKK RAKPAVPLGA NYRLIDIPVS NCLNSNISKI YVLTQFNSAS LNRHLSRAYA SNMGGYKNEG FVEVLAAQQS PENPDWFQGT ADAVRQYLWL
201: FEEHNVLEYL ILAGDHLYRM DYEKFIQAHR ETDADITVAA LPMDEKRATA FGLMKIDEEG RIIEFAEKPQ GEQLQAMKVD TTILGLDDKR AKEMPFIASM
301: GIYVISKDVM LNLLRDKFPG ANDFGSEVIP GATSFGMRVQ AYLYDGYWED IGTIEAFYNA NLGITKKPVP DFSFYDRSAP IYTQPRYLPP SKMLDADVTD
401: SVIGEGCVIK NCKIHHSVVG LRSCISEGAI IEDSLLMGAD YYETDADRKL LAAKGSVPIG IGKNCHIKRA IIDKNARIGD NVKIINKDNV QEAARETDGY
501: FIKSGIVTVI KDALIPSGIV I

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.