Factsheet for Solyc01g109790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001935	Potato	plastid	92.94	97.4
VIT_03s0038g04570.t01	Wine grape	cytosol	76.91	76.47
KRH51516	Soybean	plastid	73.47	74.18
KRH60824	Soybean	plastid	73.09	73.8
KRH24456	Soybean	plastid	73.47	72.92
KRH29435	Soybean	cytosol	72.9	72.08
Bra033604.1-P	Field mustard	cytosol, plastid	70.61	70.75
AT4G39210.1	Thale cress	plastid	70.23	70.63
AT2G21590.4	Thale cress	plastid	70.04	70.17
CDY15884	Canola	cytosol, plastid	69.08	69.62
Bra030291.1-P	Field mustard	cytosol, plastid	69.08	69.62
CDX99581	Canola	cytosol, plastid	69.08	68.95
Solyc07g019440.2.1	Tomato	plastid	67.94	68.73
GSMUA_Achr4P02930_001	Banana	mitochondrion	59.54	68.27
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	60.11	68.18
GSMUA_Achr9P06920_001	Banana	cytosol	65.84	66.47
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	66.03	66.03
Os05t0580000-01	Rice	plastid	61.83	62.43
CDY56761	Canola	endoplasmic reticulum	70.8	62.35
HORVU1Hr1G091600.9	Barley	plastid	61.45	61.33
TraesCS1B01G449700.2	Wheat	plastid	61.64	61.17
Solyc01g079790.2.1	Tomato	nucleus, plastid	59.54	60.58
CDX72711	Canola	cytosol	70.8	58.7
Zm00001d039131_P007	Maize	plastid	62.4	58.6
Os01t0633100-01	Rice	plastid	57.06	57.72
OQU87201	Sorghum	plastid	55.73	56.48
TraesCS1A01G419600.2	Wheat	plastid	58.02	56.19
TraesCS1D01G427400.2	Wheat	plastid	58.02	56.19
Solyc12g011120.1.1	Tomato	plastid	45.23	53.62
OQU78492	Sorghum	plastid	62.79	48.45
Solyc07g056140.2.1	Tomato	plastid	45.99	46.26
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	54.96	43.77
Solyc08g015670.2.1	Tomato	plastid	33.4	37.72

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	ProteinID:ABC26921.1
ProteinID:ABC26922.1	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0019252	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF4	UniProt:Q15I66	SUPFAM:SSF51161
SUPFAM:SSF53448	EnsemblPlantsGene:Solyc01g109790.2	EnsemblPlants:Solyc01g109790.2.1	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0000DA59A1
SEG:seg	:	:	:	:	:

Description

Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:Q15I66]

Coordinates

chr1:-:96636500..96641133

Molecular Weight (calculated)

58154.7 Da

IEP (calculated)

7.354

GRAVY (calculated)

-0.218

Length

524 amino acids

Sequence
(BLAST)

001: MDTCCAAMKS TVHLGRVSTG GFNNGEKEIF GEKIRGSLNN NLRINQLSKS LKLEKKIKPG VAYSVITTEN DTETVFVDMP RLERRRANPK DVAAVILGGG
101: EGTKLFPLTS RTATPAVPVG GCYRLIDIPM SNCINSAINK IFVLTQYNSA ALNRHIARTY FGNGVSFGDG FVEVLAATQT PGEAGKKWFQ GTADAVRKFI
201: WVFEDAKNKN IENILVLSGD HLYRMDYMEL VQNHIDRNAD ITLSCAPAED SRASDFGLVK IDSRGRVVQF AEKPKGFELK AMQVDTTLVG LSPQDAKKSP
301: YIASMGVYVF KTDVLLKLLK WSYPTSNDFG SEIIPAAIDD YNVQAYIFKD YWEDIGTIKS FYNASLALTQ EFPEFQFYDP KTPFYTSPRF LPPTKIDNCK
401: IKDAIISHGC FLRDCTVEHS IVGERSRLDC GVELKDTFMM GADYYQTESE IASLLAEGKV PIGIGENTKI RKCIIDKNAK IGKNVSIINK DGVQEADRPE
501: EGFYIRSGII IISEKATIRD GTVI

Best Arabidopsis Sequence Match ( AT4G39210.1 )
(BLAST)

001: MDSCCNFSLG TKTVLAKDSF KNVENKFLGE KIKGSVLKPF SSDLSSKKFR NRKLRPGVAY AIATSKNAKE ALKNQPSMFE RRRADPKNVA AIILGGGDGA
101: KLFPLTKRAA TPAVPVGGCY RMIDIPMSNC INSCINKIFV LTQFNSASLN RHLARTYFGN GINFGDGFVE VLAATQTPGE AGKKWFQGTA DAVRKFLWVF
201: EDAKNRNIEN IIILSGDHLY RMNYMDFVQH HVDSKADITL SCAPVDESRA SEYGLVNIDR SGRVVHFSEK PTGIDLKSMQ TDTTMHGLSH QEAAKSPYIA
301: SMGVYCFKTE ALLKLLTWRY PSSNDFGSEI IPAAIKDHNV QGYIYRDYWE DIGTIKSFYE ANIALVEEHP KFEFYDQNTP FYTSPRFLPP TKTEKCRIVN
401: SVISHGCFLG ECSIQRSIIG ERSRLDYGVE LQDTLMLGAD SYQTESEIAS LLAEGNVPIG IGRDTKIRKC IIDKNAKIGK NVVIMNKDDV KEADRPEEGF
501: YIRSGITVVV EKATIKDGTV I

Arabidopsis Description

APL3Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178US50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.