Factsheet for Zm00001d044129_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87201	Sorghum	plastid	70.67	89.94
Os01t0633100-01	Rice	plastid	59.57	75.68
Zm00001d039131_P007	Maize	plastid	54.86	64.7
CDY41275	Canola	cytosol	30.55	62.42
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	43.47	61.9
GSMUA_Achr4P02930_001	Banana	mitochondrion	42.86	61.71
GSMUA_Achr9P06920_001	Banana	cytosol	46.2	58.57
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	45.74	57.44
VIT_18s0001g12840.t01	Wine grape	plastid	43.92	55.15
KRH24456	Soybean	plastid	44.22	55.11
KRH60824	Soybean	plastid	43.47	55.11
KRH51516	Soybean	plastid	43.47	55.11
Solyc01g109790.2.1	Tomato	extracellular	43.77	54.96
KRH61137	Soybean	plastid	44.22	54.91
CDX84911	Canola	plastid	42.55	54.9
Bra032842.1-P	Field mustard	plastid	43.01	54.74
CDY27626	Canola	plastid	43.01	54.74
KRH29435	Soybean	cytosol	44.07	54.72
PGSC0003DMT400041215	Potato	plastid	43.16	54.51
AT1G27680.1	Thale cress	plastid	42.86	54.44
KRH51829	Soybean	plastid	43.92	54.43
Solyc07g019440.2.1	Tomato	plastid	42.71	54.25
PGSC0003DMT400001935	Potato	plastid	41.19	54.2
Bra033604.1-P	Field mustard	cytosol, plastid	43.01	54.11
VIT_03s0038g04570.t01	Wine grape	cytosol	43.31	54.08
CDY15884	Canola	cytosol, plastid	42.25	53.46
AT4G39210.1	Thale cress	plastid	42.25	53.36
AT2G21590.4	Thale cress	plastid	42.4	53.35
Bra030291.1-P	Field mustard	cytosol, plastid	42.1	53.27
CDX99581	Canola	cytosol, plastid	42.1	52.76
KRH05853	Soybean	plastid	41.03	51.53
KRH15167	Soybean	mitochondrion, plastid	40.88	51.43
Zm00001d019266_P002	Maize	plastid	39.51	50.29
CDY56761	Canola	endoplasmic reticulum	44.22	48.91
Zm00001d033910_P002	Maize	plastid	38.3	48.09
Zm00001d023256_P001	Maize	cytosol	6.99	45.54
CDX72711	Canola	cytosol	43.16	44.94
Zm00001d005546_P002	Maize	plastid	33.43	43.14
Zm00001d032385_P001	Maize	plastid	32.98	41.97
Zm00001d050032_P003	Maize	plastid	32.52	40.68
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	7.6	36.76
Zm00001d025723_P001	Maize	cytosol	20.36	31.53
Zm00001d010157_P001	Maize	plastid	16.57	26.91

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	UniProt:A0A1D6NHY1
InterPro:ADP_Glu_pyroP_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009987	GO:GO:0010170	GO:GO:0016740
GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	ProteinID:ONM40001.1
PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF1
SUPFAM:SSF51161	SUPFAM:SSF53448	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00084480BE	EnsemblPlantsGene:Zm00001d044129	EnsemblPlants:Zm00001d044129_P001
EnsemblPlants:Zm00001d044129_T001	SEG:seg	:	:	:	:

Description

shrunken2Glucose-1-phosphate adenylyltransferase large subunit 1%2C chloroplastic/amyloplastic

Coordinates

chr3:-:219979958..219989322

Molecular Weight (calculated)

72112.6 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.187

Length

658 amino acids

Sequence
(BLAST)

001: MGGQCCELEQ CGNVGGSGDT LRERKEAGTS GRAMRRMSSK PLCIANSSGR KVSKTMNGLQ KAKAKGKIGT LMMVGCMSLS ITCKKCEPLF LSSPPVCPLI
101: LYINTSTASQ LATRSLREAS AISISQPPFF CSVVYLVVGG DMQFALALDT NSGPHQIRSC EGDGIDRLEK LSIGGRKQEK ALRNRCFGGR VAATTQCILT
201: SDACPETLHS QTQSSRKNYA DANRVSAIIL GGGTGSQLFP LTSTRATPAV RDNTEHPTLI DIPMSNCFNS GINKIFVMSQ FNSTSLNRHI HRTYLEGGIN
301: FADGSVQVLA ATQMPEEPAG WFQGTADSIR KFIWVLEDYY SHKSIDNIVI LSGDQLYRMN YMELVQKHVE DDADITISCA PVDESRASKN GLVKIDHTGR
401: VLQFFEKPKG ADLNSMRVET NFLSYAIDDA QKYPYLASMG IYVFKKDALL DLLKSKYIQL HDFGSEILPR AVLDHSVQAC IFTGYWEDVG TIKSFFDANL
501: ALTEQPSKFD FYDPKTPFFT APRCLPPTQL DKCKMKDAFI SDGCLLRECN IEHSVIGVCS RVSSGCELKD SVMMGADTYE TEEEASKLLL AGKVPVGIGR
601: NTKIRNCIID MNARIGKNVV ITNSKGIQEA DHPEEGYYIR SGIVVILKNA TINDGSVI

Best Arabidopsis Sequence Match ( AT1G27680.1 )
(BLAST)

001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI

Arabidopsis Description

APL2Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.