CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02097	Soybean	nucleus, plastid	97.69	97.13
VIT_05s0020g02880.t01	Wine grape	plastid	83.65	83.65
PGSC0003DMT400023304	Potato	cytosol, plastid	78.85	79.61
Solyc01g079790.2.1	Tomato	nucleus, plastid	78.85	79.61
CDY02573	Canola	plastid	78.27	78.88
Bra002221.1-P	Field mustard	plastid	78.08	78.68
CDX92546	Canola	plastid	78.08	78.68
CDY68209	Canola	plastid	78.08	78.68
Bra023713.1-P	Field mustard	plastid	77.88	78.49
AT5G19220.1	Thale cress	plastid	78.65	78.35
CDY47206	Canola	plastid	78.08	75.05
GSMUA_Achr1P11820_001	Banana	plastid	76.92	73.66
EER90919	Sorghum	plastid	71.35	73.18
TraesCS5B01G484700.1	Wheat	plastid	70.0	72.51
Os03t0735000-01	Rice	plastid	71.15	72.41
TraesCS5A01G472000.1	Wheat	plastid	69.81	71.88
TraesCS5D01G484500.2	Wheat	plastid	69.62	71.68
Zm00001d033910_P002	Maize	plastid	70.38	69.85
HORVU0Hr1G033200.1	Barley	plastid	35.77	63.05
HORVU1Hr1G001590.2	Barley	plastid	25.0	62.2
HORVU7Hr1G093330.2	Barley	plastid	28.27	60.0
KRH61137	Soybean	plastid	60.96	59.81
KRH51829	Soybean	plastid	60.19	58.95
KRH51516	Soybean	plastid	57.88	58.0
KRH60824	Soybean	plastid	57.88	58.0
KRH15167	Soybean	mitochondrion, plastid	57.5	57.17
KRG96634	Soybean	plastid	57.88	56.9
KRH05853	Soybean	plastid	57.31	56.87
KRH24456	Soybean	plastid	57.5	56.63
KRH29435	Soybean	cytosol	57.31	56.23
KRH68365	Soybean	plastid	56.35	55.39
HORVU4Hr1G025240.1	Barley	plastid	25.58	52.57
KRH14152	Soybean	plastid	31.92	51.71
KRH14151	Soybean	cytosol	18.08	51.37
KRH73984	Soybean	nucleus, plastid	50.58	51.07

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	EntrezGene:100810451	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10
EMBL:ACUP02004727	InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EMBL:BT095876	UniProt:C6TE56	EnsemblPlantsGene:GLYMA_07G258500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	EnsemblPlants:KRH51050
ProteinID:KRH51050	ProteinID:KRH51050.1	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF8	MetaCyc:PWY-622	SUPFAM:SSF51161
SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001B16A11	:	:

Description

hypothetical protein

Coordinates

chr7:-:43424831..43431200

Molecular Weight (calculated)

57789.2 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.254

Length

520 amino acids

Sequence
(BLAST)

001: MAASAGGQIT LSSTVQLHGV TCNRNWKLVK FCNGEVMGRK LLLKNGGGST KDFKRQQQHI CMSLTADVST ESKLRDLDME RRNPRTVLAV ILGGGAGTRL
101: FPLTKRRAKP AVPIGGAYRL IDVPMSNCIN SGINKVYILT QFNSASLNRH IARAYNSGNG VTFGDGYVEV LAATQTPGEA GKKWFQGTAD AVRQFHWLFE
201: DPRSKDIEDV LILSGDHLYR MDYMDFVQNH RESGADITLS CLPMDDSRAS DFGLMKIDNK GRVLSFSEKP KGEELKAMQV DTTVLGLSKD EAQKKPYIAS
301: MGVYVFKKEI LLNLLRWRFP TANDFGSEVI PASAREFYMK AYLFNDYWED IGTIRSFFEA NLALTEHPPR FSFYDAAKPM YTSRRNLPPS KIDNSKIVDS
401: IISHGSFLNN SFIEHSVVGI RSRINSNIHL KDTVMLGADY YETDAEVAAL LAEGRVPIGI GENTKIKDCI IDKNARIGKN VVIANSEGIQ EADRSSEGFY
501: IRSGVTIVLK NSVIEDGFII

Best Arabidopsis Sequence Match ( AT5G19220.1 )
(BLAST)

001: MVVSADCRIS LSAPSCIRSS STGLTRHIKL GSFCNGELMG KKLNLSQLPN IRLRSSTNFS QKRILMSLNS VAGESKVQEL ETEKRDPRTV ASIILGGGAG
101: TRLFPLTKRR AKPAVPIGGA YRLIDVPMSN CINSGINKVY ILTQYNSASL NRHLARAYNS NGLGFGDGYV EVLAATQTPG ESGKRWFQGT ADAVRQFHWL
201: FEDARSKDIE DVLILSGDHL YRMDYMDFIQ DHRQSGADIS ISCIPIDDRR ASDFGLMKID DKGRVISFSE KPKGDDLKAM AVDTTILGLS KEEAEKKPYI
301: ASMGVYVFKK EILLNLLRWR FPTANDFGSE IIPFSAKEFY VNAYLFNDYW EDIGTIRSFF EANLALTEHP GAFSFYDAAK PIYTSRRNLP PSKIDNSKLI
401: DSIISHGSFL TNCLIEHSIV GIRSRVGSNV QLKDTVMLGA DYYETEAEVA ALLAEGNVPI GIGENTKIQE CIIDKNARVG KNVIIANSEG IQEADRSSDG
501: FYIRSGITVI LKNSVIKDGV VI

Arabidopsis Description

ADG2Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55229]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.