Factsheet for Zm00001d029557_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005749_P001
Zm00001d015515_P001
Zm00001d020492_P001
Zm00001d020495_P001
Zm00001d036726_P001
Zm00001d046805_P001
Zm00001d053746_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	Zm00001d005749_P001	AT2G25000.1	21798944
AT5G15450.1	Zm00001d015515_P001	AT2G25000.1	21798944
AT5G15450.1	Zm00001d020492_P001	AT2G25000.1	21798944
AT5G15450.1	Zm00001d020495_P001	AT2G25000.1	21798944
AT5G15450.1	Zm00001d036726_P001	AT2G25000.1	21798944
AT5G15450.1	Zm00001d046805_P001	AT2G25000.1	21798944
AT5G15450.1	Zm00001d053746_P001	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047302_P002	Maize	plastid	96.63	97.02
EER94678	Sorghum	plastid	97.03	96.54
Os03t0426900-01	Rice	plastid	91.62	91.62
TraesCSU01G131300.1	Wheat	plastid	90.08	90.73
TraesCS5A01G547300.1	Wheat	golgi, plastid	90.08	90.45
TraesCS4B01G380800.1	Wheat	plastid	89.98	90.26
HORVU4Hr1G090440.2	Barley	plastid	89.78	82.99
GSMUA_Achr6P16670_001	Banana	plastid	77.71	81.11
VIT_14s0108g01500.t01	Wine grape	plastid	80.88	81.05
KRH18417	Soybean	nucleus	80.06	80.06
KRH01254	Soybean	nucleus, plastid	79.65	79.98
KRG93616	Soybean	nucleus	79.96	79.96
KRH44979	Soybean	nucleus, plastid	79.45	79.77
Bra023518.1-P	Field mustard	plastid	78.43	79.65
AT5G15450.1	Thale cress	plastid	78.32	79.13
CDX85551	Canola	plastid	52.86	79.05
PGSC0003DMT400003652	Potato	cytosol, plastid	79.04	78.96
CDX90991	Canola	plastid	77.81	78.94
Bra008698.1-P	Field mustard	plastid	78.32	78.73
CDY26423	Canola	plastid	78.32	78.73
CDX69524	Canola	plastid	78.32	78.73
Solyc02g088610.2.1	Tomato	plastid	78.63	78.47
CDX85552	Canola	cytosol	20.14	77.25
Zm00001d015520_P001	Maize	mitochondrion	66.36	65.69
Zm00001d038806_P001	Maize	nucleus	45.71	49.01
Zm00001d029672_P004	Maize	plastid	10.84	45.3
Zm00001d024009_P001	Maize	plastid	40.08	42.56
Zm00001d003894_P004	Maize	plastid	39.98	42.45
Zm00001d025273_P019	Maize	plastid	39.88	42.35
Zm00001d036813_P001	Maize	cytosol	4.6	39.82
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	5.83	38.0
Zm00001d003847_P001	Maize	plastid	35.99	37.77
Zm00001d016664_P001	Maize	plastid	36.4	37.59
Zm00001d008786_P001	Maize	plastid	4.7	25.84
Zm00001d039497_P002	Maize	nucleus	1.02	13.16

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:103636567	MapMan:26.4.2.4	Gene3D:3.40.50.300	UniProt:A0A1D6K5Y7
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0016485	GO:GO:0019538	GO:GO:0042026	InterPro:IPR036628	ProteinID:ONL98985.1	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0004DE9FDC	EnsemblPlantsGene:Zm00001d029557	EnsemblPlants:Zm00001d029557_P001	EnsemblPlants:Zm00001d029557_T001
SEG:seg	:	:	:	:	:

Description

Chaperone protein ClpB3 chloroplastic

Coordinates

chr1:+:76065155..76078721

Molecular Weight (calculated)

108868.0 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.397

Length

978 amino acids

Sequence
(BLAST)

001: MAAAPPLSAD ALSFLTSAPA AAAAVPTPVV AAAWGAARAG HVRGKAGLRT TGGGRGGVLA PVVGKRLCRT PLSVRCNATS RDGRITQQEF TEMAWQAIVS
101: SPEVAKESKH QIVETEHMMK SLLEQRNGLA RRIFSKAGVD NTRLLDATEK FIQRQPKVLG EEPGSMLGRD LEALIQRARD FKKEYGDSYV SVEHLVLGFA
201: EDKRFGKQLF KDFQITVKTL KSAIESIRGK QNVIDQDPEG KYEALEKYGK DLTAMARQGK LDPVIGRDDE IRRCIQILSR RTKNNPVLIG EPGVGKTAIA
301: EGLAQRIVQG DVPQALTNRR LIALDMGALI AGAKYRGEFE DRLKAVLKEV TDSDGQTVLF IDEIHTVVGA GATNGAMDAG NLLKPMLGRG ELRCIGATTL
401: DEYRKYIEKD PALERRFQQV FVDQPSVEDT ISILRGLRER YELHHGVRIS DSALVAAAVL SDRYISGRFL PDKAIDLVDE SAAKLKMEIT SKPTALDEID
501: RAVLKLEMER LSLTNDTDKA SRDRLSRLEA ELSLLKDKQR QLTEQWEHEK AVMTKIQSIK EEIDRVNVEI QQAEREYDLN RAAELKYGSL NALQRQLQAT
601: EKELDEYQSS GKSMLREEVT QDDIAEIVSR WTGIPVSKLK QSDREKLLYL EDELHKRVVG QDPAVKAVAE AIQRSRAGLS DPNRPIASFM FMGPTGVGKT
701: ELAKALAAFM FNTEEAVVRI DMSEYMEKHS VSRLIGAPPG YVGYEEGGQL TEAVRRRPYS VVLFDEIEKA HSDVFNVFLQ ILDDGRVTDS QGRKVSFTNT
801: IIIMTSNVGS QYILNMDEEV GSSDSAYENI KRRVMDAARS VFRPEFMNRV DEYIVFKPLE REQINSIVKL QLARVQKRIA DRKIKLEVSP GAIEFLGSLG
901: YDPNYGARPV KRVIQQHVEN ELAKGILRGD FKDEDSIFVD TQVTVPSNGQ LPQQKLVFRK VGEQSKPAAE GEKFLPAV

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.