Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008786_P001 | Maize | plastid | 66.37 | 42.13 |
| Zm00001d039497_P002 | Maize | nucleus | 18.58 | 27.63 |
| HORVU1Hr1G076100.1 | Barley | cytosol | 35.4 | 24.54 |
| Zm00001d029672_P004 | Maize | plastid | 46.02 | 22.22 |
| Zm00001d003847_P001 | Maize | plastid | 92.92 | 11.27 |
| Zm00001d016664_P001 | Maize | plastid | 85.84 | 10.24 |
| Zm00001d024009_P001 | Maize | plastid | 49.56 | 6.08 |
| Zm00001d003894_P004 | Maize | plastid | 47.79 | 5.86 |
| Zm00001d025273_P019 | Maize | plastid | 47.79 | 5.86 |
| Zm00001d038806_P001 | Maize | nucleus | 41.59 | 5.15 |
| Zm00001d015520_P001 | Maize | mitochondrion | 41.59 | 4.76 |
| Zm00001d047302_P002 | Maize | plastid | 39.82 | 4.62 |
| Zm00001d029557_P001 | Maize | plastid | 39.82 | 4.6 |
| Zm00001d039640_P001 | Maize | cytoskeleton, cytosol, nucleus | 2.65 | 2.0 |
| TraesCS4A01G232900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d036813_P001 | EnsemblPlants:Zm00001d036813_T001 | EnsemblPlantsGene:Zm00001d036813 | Gene3D:3.40.50.300 | InterPro:P-loop_NTPase | PANTHER:PTHR43572 |
| PANTHER:PTHR43572:SF17 | ProteinID:AQK82001.1 | SignalP:SignalP-noTM | SUPFAM:SSF52540 | UniParc:UPI000842532C | UniProt:A0A1D6LRB6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Chaperone protein ClpD chloroplastic
Coordinates
chr6:+:101754267..101755065
Molecular Weight (calculated)
13209.0 Da
IEP (calculated)
7.435
GRAVY (calculated)
-0.425
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLFLSLLIV HFEKDKALAR RFQPVLVNEP SQEDAIKILL GLCEKYETYH KCKYTLEGIN ATVYLSARYI PDRHLPDKAI DLIDEAGSRA RMESFKRKKE
101: EQCSILSKSP DEY
101: EQCSILSKSP DEY
001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
Arabidopsis Description
CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.