Factsheet for Zm00001d029672_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46928	Soybean	endoplasmic reticulum	32.48	63.87
Zm00001d036813_P001	Maize	cytosol	22.22	46.02
Zm00001d008786_P001	Maize	plastid	15.38	20.22
Zm00001d003894_P004	Maize	plastid	63.68	16.18
Zm00001d025273_P019	Maize	plastid	63.68	16.18
Zm00001d024009_P001	Maize	plastid	60.68	15.42
Zm00001d015520_P001	Maize	mitochondrion	47.86	11.34
Zm00001d038806_P001	Maize	nucleus	44.02	11.29
Zm00001d047302_P002	Maize	plastid	45.3	10.88
Zm00001d029557_P001	Maize	plastid	45.3	10.84
Zm00001d016664_P001	Maize	plastid	42.73	10.56
Zm00001d003847_P001	Maize	plastid	41.45	10.41
AT3G45450.1	Thale cress	cytosol	14.96	10.26
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	3.85	6.0
Zm00001d039497_P002	Maize	nucleus	0.85	2.63

Protein Annotations

EnsemblPlants:Zm00001d029672_P004	EnsemblPlants:Zm00001d029672_T004	EnsemblPlantsGene:Zm00001d029672	Gene3D:3.40.50.300	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:P-loop_NTPase	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	ProteinID:ONL99344.1	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI00084297B4	UniProt:A0A1D6K706	MapMan:35.1	:	:

Description

Chaperone protein ClpC1 chloroplastic

Coordinates

chr1:-:82097005..82099710

Molecular Weight (calculated)

26618.4 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.187

Length

234 amino acids

Sequence
(BLAST)

001: MRRRLARQPV AAPMSSTPPR CTFLVVGVLL EPVGSAAEQV TWTGLLVAGT KYRGEFECTG ATTLDGYRKH IEKDPALERR FQPVKVPEPT VDETIQILRG
101: LHERYELHHK LRYTDDALIA AAQLSYQYIS DRFLPDKAID LIDEAGSRVR LRHAQLPDEA KELDKELRQI SKQKNKAVRG QDFEKVYYCL AHRRSAPTSL
201: ATSIWLIPSI MLFPFEINIL LLILPFVSSS CFLL

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.