Factsheet for Zm00001d038806_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
nucleus: 24677780
mitochondrion: 27297264

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19828	Sorghum	nucleus	97.59	97.48
Os05t0519700-01	Rice	nucleus	95.94	95.94
HORVU1Hr1G076190.4	Barley	nucleus	93.75	93.34
TraesCS1D01G342100.1	Wheat	golgi	93.64	93.03
TraesCS1B01G352400.1	Wheat	cytosol, golgi	93.31	92.8
TraesCS1A01G340100.1	Wheat	nucleus	93.09	92.48
GSMUA_Achr1P13710_001	Banana	cytosol	81.69	87.54
GSMUA_Achr3P16240_001	Banana	cytosol	80.26	85.92
VIT_17s0000g07190.t01	Wine grape	nucleus	85.31	85.4
CDX96531	Canola	cytosol	69.52	85.33
CDX73074	Canola	cytosol	69.41	85.2
KRH54672	Soybean	endoplasmic reticulum	69.85	84.59
Bra015922.1-P	Field mustard	nucleus	84.32	84.41
AT1G74310.1	Thale cress	nucleus	84.32	84.41
CDX85823	Canola	nucleus	81.25	83.92
KRH56831	Soybean	endoplasmic reticulum	83.66	83.75
Bra003807.1-P	Field mustard	nucleus	79.93	82.65
Solyc03g115230.2.1	Tomato	plastid	82.13	82.22
CDX68190	Canola	nucleus	73.36	82.09
PGSC0003DMT400063352	Potato	nucleus	81.91	81.91
Solyc06g082560.1.1	Tomato	plastid	74.89	79.98
AT4G14670.1	Thale cress	cytosol	47.92	70.14
AT4G14675.1	Thale cress	cytosol	8.0	45.91
Zm00001d047302_P002	Maize	plastid	49.01	45.89
Zm00001d029557_P001	Maize	plastid	49.01	45.71
Zm00001d029672_P004	Maize	plastid	11.29	44.02
Zm00001d015520_P001	Maize	mitochondrion	47.04	43.42
Zm00001d036813_P001	Maize	cytosol	5.15	41.59
Zm00001d024009_P001	Maize	plastid	38.71	38.33
Zm00001d003894_P004	Maize	plastid	38.49	38.11
Zm00001d025273_P019	Maize	plastid	38.38	38.0
Zm00001d003847_P001	Maize	plastid	37.06	36.27
Zm00001d039640_P001	Maize	cytoskeleton, cytosol, nucleus	5.92	36.0
Zm00001d016664_P001	Maize	plastid	37.28	35.9
Zm00001d008786_P001	Maize	plastid	5.59	28.65
Zm00001d039497_P002	Maize	nucleus	1.21	14.47

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	EntrezGene:541780	InterPro:AAA+_ATPase
ProteinID:AQK87867.1	InterPro:ATPase_AAA_core	EMBL:BT066296	UniProt:C0PDC7	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0034605	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000194B28F	EnsemblPlantsGene:Zm00001d038806	EnsemblPlants:Zm00001d038806_P001	EnsemblPlants:Zm00001d038806_T001	SEG:seg

Description

heat-shock protein 101Chaperone protein ClpB1

Coordinates

chr6:+:164808309..164812048

Molecular Weight (calculated)

101125.0 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.331

Length

912 amino acids

Sequence
(BLAST)

001: MNPDNFTHKT NEAIVGAHEI AVEAGHAQLT PLHLAAVLAA DKGGILRQAI TGASGGDGAA GDSFERVLNN SLKKLPSQSP PPDSVPASTA LIKVIRRAQS
101: AQKKRGDSHL AVDQLLLGLL EDSQISDCLK EAGVSAARVR AELEKLRGGE GRRVESASGD TNFQALKTYG RDLVEQAGKL DPVIGRDEEI RRVVRILSRR
201: TKNNPVLIGE PGVGKTAVVE GLAQRIVRGD VPSNLLDVRL IALDMGALVA GAKYRGEFEE RLKAVLKEVE EAEGKVILFI DEIHLVLGAG RTEGSMDAAN
301: LFKPMLARGQ LRCIGATTLE EYRKYVEKDA AFERRFQQVF VAEPSVPDTV SILRGLKEKY EGHHGVRIQD RALVVAAQLS ARYIMGRHLP DKAIDLVDEA
401: CANVRVQLDS QPEEIDNLER KRIQLEVELH ALEKEKDKAS KARLIEVRKE LDDLRDKLQP LTMKYRKEKE RIDEIRKLKQ RREELQFTLQ EAERRMDLAR
501: VADLKYGALQ EIDAAISKLE SETGENLMLT ETVGPEQIAE VVSRWTGIPV TRLGQNDKER LVGLADRLHQ RVVGQTEAVS AVAEAVLRSR AGLGRPQQPT
601: GSFLFLGPTG VGKTELAKAL AEQLFDDENL LVRIDMSEYM EQHSVARLIG APPGYVGHEE GGQLTEQVRR RPYSVILFDE VEKAHVAVFN TLLQVLDDGR
701: LTDGQGRTVD FRNTVIIMTS NLGAEHLLAG MVGKNSMKVA RDLVMQEVRR HFRPELLNRL DEIVIFDPLS HEQLRKVARL QMKDVAVRLA ERGIALAVTD
801: AALDIILSLS YDPVYGARPI RRWIEKRVVT QLSKMLIQEE IDENCTVYID AAPGKDELVY RVDRSGGLVN AETGMKSDIL IQVPTSSTRS DAAQAVKKMR
901: IMEEDEDGMD EE

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.