CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03117	Soybean	cytosol	52.46	87.0
KRH63249	Soybean	mitochondrion	21.38	82.99
KRH56831	Soybean	endoplasmic reticulum	89.64	74.09
VIT_17s0000g07190.t01	Wine grape	nucleus	87.78	72.56
Bra015922.1-P	Field mustard	nucleus	87.38	72.23
AT1G74310.1	Thale cress	nucleus	87.12	72.01
CDX85823	Canola	nucleus	83.67	71.35
Solyc06g082560.1.1	Tomato	plastid	80.35	70.84
Bra003807.1-P	Field mustard	nucleus	82.74	70.63
Solyc03g115230.2.1	Tomato	plastid	85.26	70.47
PGSC0003DMT400063352	Potato	nucleus	85.13	70.29
Zm00001d038806_P001	Maize	nucleus	84.59	69.85
Os05t0519700-01	Rice	nucleus	84.59	69.85
EES19828	Sorghum	nucleus	84.59	69.77
TraesCS1D01G342100.1	Wheat	golgi	84.33	69.17
TraesCS1B01G352400.1	Wheat	cytosol, golgi	84.06	69.03
TraesCS1A01G340100.1	Wheat	nucleus	84.06	68.95
TraesCS3A01G274400.1	Wheat	cytosol	83.53	68.89
TraesCS3D01G273600.1	Wheat	cytosol	83.4	68.78
TraesCS3B01G308100.1	Wheat	cytosol	83.4	68.78
CDX73074	Canola	cytosol	67.86	68.78
CDX96531	Canola	cytosol	67.86	68.78
GSMUA_Achr1P13710_001	Banana	cytosol	77.69	68.74
CDX68190	Canola	nucleus	73.84	68.22
GSMUA_Achr3P16240_001	Banana	cytosol	76.23	67.37
EES01468	Sorghum	nucleus	81.41	66.99
TraesCS4B01G393100.1	Wheat	cytosol	70.92	59.14
HORVU7Hr1G008950.1	Barley	cytosol, plastid	15.67	49.58
KRH46928	Soybean	endoplasmic reticulum	7.44	47.06
KRH52355	Soybean	cytosol, mitochondrion	38.25	44.24
KRG93616	Soybean	nucleus	53.52	41.21
KRH01254	Soybean	nucleus, plastid	53.25	41.17
KRH18417	Soybean	nucleus	53.39	41.1
KRH44979	Soybean	nucleus, plastid	53.12	41.07
KRH61688	Soybean	mitochondrion	51.39	39.73
KRH59753	Soybean	endoplasmic reticulum	41.83	34.28
KRH63851	Soybean	plastid	41.97	34.27
KRH54115	Soybean	plastid	41.97	34.27
KRH41069	Soybean	mitochondrion, plastid	41.57	34.06
KRH63903	Soybean	plastid	37.58	29.92
KRH54048	Soybean	plastid	37.32	29.58

Protein Annotations

Gene3D:1.10.1780.10	EntrezGene:100797673	MapMan:26.4.2.3	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:ACUP02003561
InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_06G202200	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	UniProt:I1KD00	InterPro:IPR036628	EnsemblPlants:KRH54672
ProteinID:KRH54672	ProteinID:KRH54672.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00023C326C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:18712543..18716545

Molecular Weight (calculated)

83397.0 Da

IEP (calculated)

6.579

GRAVY (calculated)

-0.384

Length

753 amino acids

Sequence
(BLAST)

001: MNPDKFTHKT NEALVSAHEI ATSNGHAQFT PLHLASSLIS DKDGIFSQAL SNAAGEESAR AAERVINNAL KKLPSQSPLP DEVPASNALV KAIRRAQTLQ
101: KKRGDTHLAV DQLILGLLED SQIAELLNEA GVAASKVKSE VERLRGKEGK KVESATGDST FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP SNLSDVKLIA LDMGALVAGA KYRGEFEERL KAVLKEVEDA EGKVILFIDE IHLVLGAGKG EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVVDTISI LRGLKERYEG HHGVRILDRA LVVAAQLSSR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSHP EEIDNLERKR MQLEVELHAL EKEKDKASKA RLVEVRKELD DLRDKLQPLM MKYKKEKERI DNIRRLKQKR EELNFALQEA ERRYDLARAA
501: DLRYGAIQEV ESAIQELEGN NEGNVMLTET VGPEHIAEVV SRWTGIPVTR LGQNDKERLI GLADRLHQRV VGQDQAVNAV AEAVLRSRAG LGRPQQPTGS
601: FLFLGPTGVG KTELSKALAE QLFDDENQLV RIDMSEYMEQ HSVSRLIGAP PGYVGHEEGG QLTEAIRRRP YSVVLFDEVE KAHTSVFNTL LQVLDDGRLT
701: DGQGRTVDFR NTVIIMTSNL GAEHLLTGLS GKSSMQVARD RVMQEVCLLT PFV

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.