CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 7
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	KRG91803	AT4G09570.1	19130088
AT5G50920.1	KRH34983	AT4G09570.1	19130088
AT5G50920.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59753	Soybean	endoplasmic reticulum	97.28	97.28
GSMUA_Achr6P08050_001	Banana	cytosol	13.17	95.28
KRH54115	Soybean	plastid	92.49	92.19
KRH63851	Soybean	plastid	92.49	92.19
CDX84888	Canola	cytosol	82.81	92.02
GSMUA_Achr6P08040_001	Banana	cytosol	63.55	90.68
Os04t0397100-01	Rice	plastid	39.28	89.58
CDY64710	Canola	cytosol	80.09	89.54
Solyc12g042060.1.1	Tomato	plastid	88.25	87.87
PGSC0003DMT400037527	Potato	cytosol	88.14	87.76
Solyc03g118340.2.1	Tomato	nucleus	87.92	87.26
PGSC0003DMT400036961	Potato	plastid	87.6	87.03
PGSC0003DMT400054236	Potato	plastid	85.85	86.7
GSMUA_Achr3P18630_001	Banana	plastid	84.77	86.27
Bra022751.1-P	Field mustard	plastid	87.16	86.22
AT5G50920.1	Thale cress	plastid	86.94	86.01
Bra018030.1-P	Field mustard	mitochondrion	82.92	85.81
CDY45800	Canola	plastid	85.96	85.78
TraesCS6B01G233800.1	Wheat	plastid	84.98	85.26
GSMUA_Achr6P16470_001	Banana	plastid	81.18	85.16
TraesCS6A01G195200.1	Wheat	plastid	84.87	85.15
TraesCS6D01G183600.2	Wheat	cytosol, plastid	84.77	85.04
Zm00001d025273_P019	Maize	plastid	85.09	84.91
Zm00001d003894_P004	Maize	plastid	84.98	84.8
EES12052	Sorghum	plastid	84.98	84.8
HORVU2Hr1G071080.3	Barley	plastid	84.55	84.73
TraesCS2B01G304200.1	Wheat	golgi	84.33	84.51
TraesCS2D01G285800.1	Wheat	plastid	84.33	84.51
CDX68504	Canola	mitochondrion	85.2	84.38
Os12t0230100-01	Rice	plastid	84.33	84.33
Bra029922.1-P	Field mustard	mitochondrion	85.09	84.27
CDX83052	Canola	mitochondrion	84.98	84.25
TraesCS2A01G287300.2	Wheat	plastid	81.94	84.13
Zm00001d024009_P001	Maize	plastid	84.22	84.04
KXG23307	Sorghum	plastid	84.11	83.93
CDY05878	Canola	mitochondrion	84.87	83.69
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	88.68	83.08
TraesCS5A01G118900.1	Wheat	unclear	83.13	83.04
TraesCS5B01G112500.1	Wheat	plastid	82.81	82.72
TraesCS5D01G118700.1	Wheat	plastid	82.81	82.72
GSMUA_Achr8P09160_001	Banana	plastid	82.15	81.71
AT3G48870.3	Thale cress	cytosol, plastid	84.44	81.51
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	82.59	78.01
KRH46928	Soybean	endoplasmic reticulum	8.38	64.71
TraesCS4B01G082900.1	Wheat	mitochondrion	51.9	63.35
GSMUA_AchrUn_...	Banana	plastid	79.22	62.17
KRH63249	Soybean	mitochondrion	10.45	49.48
KRH52355	Soybean	cytosol, mitochondrion	31.01	43.78
KRH63903	Soybean	plastid	44.72	43.45
KRH54048	Soybean	plastid	44.29	42.84
KRH03117	Soybean	cytosol	21.0	42.51
KRH54672	Soybean	endoplasmic reticulum	34.06	41.57
KRH61688	Soybean	mitochondrion	43.53	41.07
KRH01254	Soybean	nucleus, plastid	43.09	40.66
KRH18417	Soybean	nucleus	43.2	40.59
KRG93616	Soybean	nucleus	43.09	40.49
KRH44979	Soybean	nucleus, plastid	42.55	40.14
KRH56831	Soybean	endoplasmic reticulum	38.96	39.3

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100795228	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02004750	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G008400	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
UniProt:I1KP32	InterPro:IPR001943	InterPro:IPR036628	ProteinID:KRH41068.1	EnsemblPlants:KRH41069	ProteinID:KRH41069
ProteinID:KRH41069.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572
PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0002338130
InterPro:UVR_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:664058..672398

Molecular Weight (calculated)

102175.0 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.378

Length

919 amino acids

Sequence
(BLAST)

001: MARVLAQSTG MPGLLSGRRH GPHKGSGKTK RSVKMMSTLR IPALRMSSFS GLRTLNPLDS VSRPRHTFPL TTTSRRERAK RCVPKAMFER FTEKAIKVIM
101: LAQEEARRLG HNFVGTEQIL LGLIGEGTGI AAKVLKSMGI NLKDARVEVE KIIGRGSGFV AVEIPFTSRA KRVLELSLEE ARQLGHNYIG SEHLLLGLLR
201: EGEGVAARVL ENLAADPNNI RAQVIRMVGE GADSVGATVG PGSSNNNKMP TLEEYGTNLT KLAEEGKLDP VMGRQPQIER VTQILGRRTK NNPCLIGEPG
301: VGKTAIAEGL AQRIANGDVP ETIEGKKVIT LDMGLLVAGT KYRGEFEERL KKLMEEIKQS DEIILFIDEV HTLIGAGAAE GAIDAANILK PALARGELQC
401: IGATTLDEYR KHIEKDPALE RRFQPVKVPE PTVNETIQIL KGLRERYEIH HKLHYTDDAL VAAAQLSHQY ISDRFLPDKA IDLIDEAGSR VRLQHAQLPE
501: EARELDKEVR QIVKEKEESV RNQDFEKAGE LRDKEMDLKA QISALIEKGK EMSKAESEAG DEGPMVTEVD IQHIVSSWTG IPVEKVSTDE SDRLLKMEET
601: LHKRVIGQDE AVKAISRAIR RARVGLKNPN RPIASFIFSG PTGVGKSELA KALAAYYFGS EEAMIRLDMS EFMERHTVSK LIGSPPGYVG YTEGGQLTEA
701: VRRRPYTVVL FDEIEKAHPD VFNMMLQILE DGRLTDSKGR TVDFKNTLLI MTSNVGSSVI EKGGRKIGFD LDYDEKDSSY NRIKSLVTEE LKQYFRPEFL
801: NRLDEMIVFR QLTKLEVKEI ADIMLKEVFQ RLKAKEIDLS VTERFRERVV DEGYNPSYGA RPLRRAIMQL LEDSMAEKML AREIKEGDSV IVDSDSEGNV
901: IVLNGSSGAP DSLEDVLVS

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.