Factsheet for TraesCS2A01G287300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	13.85	97.64
TraesCS2D01G285800.1	Wheat	plastid	99.89	97.49
TraesCS2B01G304200.1	Wheat	golgi	99.78	97.38
HORVU2Hr1G071080.3	Barley	plastid	99.33	96.95
Zm00001d025273_P019	Maize	plastid	96.31	93.59
Zm00001d003894_P004	Maize	plastid	96.31	93.59
EES12052	Sorghum	plastid	95.87	93.16
TraesCS6A01G195200.1	Wheat	plastid	93.85	91.7
Os04t0397100-01	Rice	plastid	41.23	91.56
CDX84888	Canola	cytosol	80.89	87.55
GSMUA_Achr6P08040_001	Banana	cytosol	62.91	87.42
CDY64710	Canola	cytosol	79.44	86.5
GSMUA_Achr3P18630_001	Banana	plastid	85.7	84.94
PGSC0003DMT400037527	Potato	cytosol	87.26	84.62
Solyc12g042060.1.1	Tomato	plastid	87.15	84.51
GSMUA_Achr6P16470_001	Banana	plastid	81.56	83.33
KRH54115	Soybean	plastid	85.7	83.19
KRH63851	Soybean	plastid	85.59	83.08
PGSC0003DMT400036961	Potato	plastid	85.7	82.92
Solyc03g118340.2.1	Tomato	nucleus	85.59	82.72
KRH59753	Soybean	endoplasmic reticulum	84.92	82.7
TraesCS5A01G118900.1	Wheat	unclear	84.92	82.61
KRH41069	Soybean	mitochondrion, plastid	84.13	81.94
PGSC0003DMT400054236	Potato	plastid	83.02	81.65
Bra018030.1-P	Field mustard	mitochondrion	81.01	81.64
AT5G50920.1	Thale cress	plastid	84.69	81.59
Bra022751.1-P	Field mustard	plastid	84.47	81.38
CDY45800	Canola	plastid	83.35	81.0
CDX68504	Canola	mitochondrion	83.24	80.28
Bra029922.1-P	Field mustard	mitochondrion	83.13	80.17
CDX83052	Canola	mitochondrion	83.02	80.15
CDY05878	Canola	mitochondrion	83.24	79.94
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	86.37	78.8
AT3G48870.3	Thale cress	cytosol, plastid	81.79	76.89
TraesCS4A01G232800.1	Wheat	plastid	73.52	70.15
GSMUA_AchrUn_...	Banana	plastid	78.77	60.2
VIT_16s0100g00180.t01	Wine grape	cytosol	4.47	58.82
VIT_07s0005g05810.t01	Wine grape	cytosol	4.47	58.82
TraesCS4A01G232900.1	Wheat	cytosol	9.05	58.7
PGSC0003DMT400037525	Potato	plastid	16.65	58.66
TraesCS3A01G106800.1	Wheat	cytosol	30.17	42.65
TraesCS5A01G321300.1	Wheat	plastid	43.8	42.33
TraesCS1A01G304800.1	Wheat	cytosol	31.96	42.12
TraesCS7A01G456700.1	Wheat	mitochondrion	22.23	42.07
TraesCS7A01G048300.1	Wheat	cytosol	28.27	42.03
TraesCS4A01G267200.1	Wheat	cytosol, plastid	31.4	41.88
TraesCS3A01G090400.1	Wheat	cytosol	23.91	41.31
TraesCS2A01G291100.1	Wheat	plastid	43.46	41.12
TraesCS7A01G050300.1	Wheat	endoplasmic reticulum	28.49	41.0
TraesCS7A01G050400.1	Wheat	endoplasmic reticulum	28.38	40.84
TraesCS3A01G124200.1	Wheat	mitochondrion	26.03	40.52
TraesCS4A01G436900.1	Wheat	endoplasmic reticulum	28.16	40.51
TraesCS5A01G046800.1	Wheat	cytosol	21.9	40.0
TraesCS4A01G324100.1	Wheat	cytosol	28.49	39.97
TraesCS4A01G436600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	29.61	39.91
TraesCS4A01G437000.1	Wheat	endoplasmic reticulum, mitochondrion	26.59	39.8
TraesCS7A01G048500.1	Wheat	endoplasmic reticulum	28.16	39.75
TraesCS5A01G062800.1	Wheat	mitochondrion	30.61	39.48
TraesCS7A01G050700.1	Wheat	extracellular	29.05	39.16
TraesCS6A01G146400.1	Wheat	mitochondrion	42.91	38.75
TraesCS7A01G048400.1	Wheat	cytosol	27.71	38.57
TraesCS4A01G443300.1	Wheat	plastid	27.26	37.95
TraesCS4A01G443200.1	Wheat	cytosol	27.26	37.95
TraesCS5A01G547300.1	Wheat	golgi, plastid	41.23	37.88
TraesCS7A01G050600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	24.47	37.06
TraesCS1A01G340100.1	Wheat	nucleus	37.09	36.17
TraesCS3A01G274400.1	Wheat	cytosol	36.76	36.03
TraesCS4A01G226000.1	Wheat	mitochondrion, plastid	31.06	35.96
TraesCS4A01G324200.1	Wheat	cytosol	4.13	34.26

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:TraesCS2A01G287300	EnsemblPlants:TraesCS2A01G287300.2	InterPro:UVR_dom	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:489961926..489969143

Molecular Weight (calculated)

99018.4 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.320

Length

895 amino acids

Sequence
(BLAST)

001: MEGTLVQSAI APTAYRSSST RSRVRTRATM LRSTPTRTLI LGGFQGLRQT NFLDTRSVIK RDFGSIVASQ ISRPRGSGSR MVVRAMFERF TEKAIKVIML
101: AQEEARRLGH NFVGTEQILL GLIGEGTGIA AKVLKSMGIS LKDARVEVEK IIGRGSGFVA VEIPFTPRAK RVLELSLEEA RQLGHNYIGS EHLLLGLLRE
201: GEGVAARVLE SLGADPNNIR TQVIRMVGES TEAVGAGVGG GSSGQKMPTL EEYGTNLTKL AEEGKLDPVV GRQDQIERVT QILGRRTKNN PCLIGEPGVG
301: KTAIAEGLAQ RICNGDVPET IEGKKVITLD MGLLVAGTKY RGEFEERLKK LMEEIKQNDD IILFIDEVHT LIGAGAAEGA IDAANILKPA LARGELQCIG
401: ATTLDEYRKH IEKDPALERR FQPVKVPEPT VEESIQILRG LRERYELHHK LRYTDDALVA AAQLSYQYIS DRFLPDKAID LIDEAGSRVR LRHAQLPDEA
501: KELDKKLRQI TKDKNEAVRG QDFEKAGELR DEEMELKAQI TAIIDKSKEM VKAETESGEV GPLVTEADIQ HIVSSWTGIP VEKVSSDESD RLLKMEETLH
601: TRIIGQDEAV KAISRAIRRA RVGLKNPNRP IASFIFSGPT GVGKSELAKA LASYYFGSEE AMIRLDMSEF MERHTVSKLI GSPPGYVGYT EGGQLTEAVR
701: RRPYTVVLFD EIEKAHPDVF KNTLLIMTSN VGSSVIEKGG RKIGFDLDSD EKDTSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM
801: LKEVFDRLKA KEIDLQVTEK FRDRVVDEGY NPSYGARPLR RAIMRLLEDS LAEKMLAGEV KEGDSAIVDV DSDGKVVVLN SGGGIAEPLE PALSA

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.