Factsheet for TraesCS3A01G124200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
endoplasmic reticulum 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G062800.1	Wheat	mitochondrion	77.91	64.55
TraesCS7A01G456700.1	Wheat	mitochondrion	47.48	57.72
TraesCS3A01G090400.1	Wheat	cytosol	51.3	56.95
Os02t0537400-01	Rice	cytosol	43.3	56.85
TraesCS7A01G048300.1	Wheat	cytosol	59.3	56.64
TraesCS3A01G106800.1	Wheat	cytosol	62.26	56.56
TraesCS1A01G304800.1	Wheat	cytosol	66.43	56.26
TraesCS7A01G048500.1	Wheat	endoplasmic reticulum	61.22	55.52
TraesCS4A01G267200.1	Wheat	cytosol, plastid	64.7	55.44
TraesCS5A01G046800.1	Wheat	cytosol	46.09	54.08
TraesCS4A01G436900.1	Wheat	endoplasmic reticulum	57.74	53.38
TraesCS7A01G050400.1	Wheat	endoplasmic reticulum	57.74	53.38
TraesCS7A01G048400.1	Wheat	cytosol	59.65	53.34
TraesCS7A01G050300.1	Wheat	endoplasmic reticulum	57.57	53.22
TraesCS4A01G443200.1	Wheat	cytosol	59.3	53.03
TraesCS4A01G443300.1	Wheat	plastid	58.96	52.72
TraesCS4A01G437000.1	Wheat	endoplasmic reticulum, mitochondrion	54.78	52.68
TraesCS4A01G324100.1	Wheat	cytosol	58.26	52.51
TraesCS4A01G436600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	59.83	51.81
TraesCS7A01G050700.1	Wheat	extracellular	59.48	51.51
TraesCS4A01G324200.1	Wheat	cytosol	9.57	50.93
OQU85081	Sorghum	mitochondrion, plastid	61.22	49.03
TraesCS7A01G050600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	49.22	47.88
OQU81585	Sorghum	cytosol	53.22	47.37
KRH63249	Soybean	mitochondrion	15.13	44.85
TraesCS4A01G226000.1	Wheat	mitochondrion, plastid	51.83	38.55
TraesCS3A01G274400.1	Wheat	cytosol	54.26	34.17
TraesCS1A01G340100.1	Wheat	nucleus	54.09	33.88
TraesCS5A01G547300.1	Wheat	golgi, plastid	45.91	27.1
TraesCS6A01G195200.1	Wheat	plastid	42.96	26.97
TraesCS5A01G118900.1	Wheat	unclear	42.78	26.74
TraesCS6A01G146400.1	Wheat	mitochondrion	45.22	26.24
TraesCS2A01G287300.2	Wheat	plastid	40.52	26.03
TraesCS4A01G232900.1	Wheat	cytosol	6.09	25.36
TraesCS4A01G232800.1	Wheat	plastid	40.87	25.05
TraesCS2A01G291100.1	Wheat	plastid	41.04	24.95
TraesCS5A01G321300.1	Wheat	plastid	39.83	24.73

Protein Annotations

EnsemblPlants:TraesCS3A01G124200.1	EnsemblPlantsGene:TraesCS3A01G124200	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:Clp_ATPase_C	InterPro:P-loop_NTPase
PANTHER:PTHR11638	PANTHER:PTHR11638:SF100	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	SEG:seg
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	TIGR:cd00009	MapMan:35.1	:

Description

No Description!

Coordinates

chr3A:+:100345414..100354641

Molecular Weight (calculated)

63511.5 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.206

Length

575 amino acids

Sequence
(BLAST)

001: MTRVWRHVQP VLWLGATTGL CWAVWRYHRY RTCLRSNSRN ITEPSADEGN DPVIGRDSEI DRIICILCRR TKNCAALVGE AGVGKTAIVE GLTQRIASGK
101: VPTKLAGARV VEVDLGAMVA ETDLCGMFEQ RIKDVIRSAE DGDDKVILFI DEMHMLLGAG ATTLNEYHKY IQADAALERR FQKVHVEEPS VEVTIAILKG
201: LKQRYQDHHG LEIQDAALVA AAQLAGRYTT DRHFPDKAID LIDEACAATR IMLDSEREAT AARTQIYDKK EQEIVGPGHV AQVVSRWTGI PVAAIDQDEK
301: EKLLHLADKL HQRVVGQDEA VNLVAQATEL AKALAEQLFD SEKTLVRFDM SEYGSIGSVL RLIGAPPGYR GYEDGGQLTE KVKRRPYSII LFDEVEKAHP
401: VFNVFLQLLD DGLLTDGKGC TVDFKSTIII MTSNLGSKHF AAGMAGEKTI QQARGLMFMQ VWKRFKPELL NRLSEIAIVE IQMKGVAARV ANKGISLHAS
501: DAALDMYGAR PIRRWVQKNV MTAISEMLVK GEAGEGSTIS IDATDDKKGL KYEVVTEGGR STWQPLRAGT SASSR

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.