Factsheet for TraesCS4A01G436600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G050700.1	Wheat	extracellular	95.48	95.48
TraesCS7A01G050600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	83.28	93.57
HORVU7Hr1G008940.2	Barley	cytosol	87.65	91.65
HORVU7Hr1G035110.4	Barley	cytosol	59.04	89.09
HORVU7Hr1G009000.2	Barley	cytosol	47.14	88.92
TraesCS7A01G048500.1	Wheat	endoplasmic reticulum	72.59	76.03
TraesCS7A01G048300.1	Wheat	cytosol	67.32	74.25
TraesCS7A01G048400.1	Wheat	cytosol	69.88	72.16
TraesCS4A01G443200.1	Wheat	cytosol	69.88	72.16
TraesCS4A01G443300.1	Wheat	plastid	69.73	72.01
TraesCS5A01G046800.1	Wheat	cytosol	52.86	71.63
TraesCS7A01G050400.1	Wheat	endoplasmic reticulum	65.66	70.1
TraesCS7A01G050300.1	Wheat	endoplasmic reticulum	65.51	69.94
TraesCS4A01G436900.1	Wheat	endoplasmic reticulum	65.06	69.45
TraesCS4A01G437000.1	Wheat	endoplasmic reticulum, mitochondrion	61.9	68.73
TraesCS7A01G456700.1	Wheat	mitochondrion	46.23	64.9
TraesCS3A01G090400.1	Wheat	cytosol	48.95	62.74
Os02t0537400-01	Rice	cytosol	40.66	61.64
TraesCS4A01G267200.1	Wheat	cytosol, plastid	61.75	61.1
TraesCS3A01G106800.1	Wheat	cytosol	57.98	60.82
TraesCS3A01G124200.1	Wheat	mitochondrion	51.81	59.83
TraesCS4A01G324100.1	Wheat	cytosol	56.63	58.93
TraesCS5A01G062800.1	Wheat	mitochondrion	61.3	58.65
TraesCS1A01G304800.1	Wheat	cytosol	59.64	58.32
TraesCS4A01G324200.1	Wheat	cytosol	9.34	57.41
KRH63249	Soybean	mitochondrion	15.21	52.06
OQU81585	Sorghum	cytosol	50.6	52.01
OQU85081	Sorghum	mitochondrion, plastid	56.17	51.95
TraesCS4A01G226000.1	Wheat	mitochondrion, plastid	51.05	43.86
TraesCS3A01G274400.1	Wheat	cytosol	52.86	38.44
TraesCS1A01G340100.1	Wheat	nucleus	52.11	37.69
TraesCS6A01G195200.1	Wheat	plastid	41.42	30.02
TraesCS5A01G118900.1	Wheat	unclear	41.57	30.0
TraesCS2A01G287300.2	Wheat	plastid	39.91	29.61
TraesCS5A01G547300.1	Wheat	golgi, plastid	42.92	29.26
TraesCS4A01G232800.1	Wheat	plastid	40.81	28.89
TraesCS6A01G146400.1	Wheat	mitochondrion	42.47	28.46
TraesCS4A01G232900.1	Wheat	cytosol	5.87	28.26
TraesCS5A01G321300.1	Wheat	plastid	39.31	28.19
TraesCS2A01G291100.1	Wheat	plastid	39.01	27.38

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
PANTHER:PTHR11638	PANTHER:PTHR11638:SF100	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS4A01G436600	EnsemblPlants:TraesCS4A01G436600.1	TIGR:cd00009	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:-:706497080..706499477

Molecular Weight (calculated)

72610.8 Da

IEP (calculated)

7.329

GRAVY (calculated)

-0.078

Length

664 amino acids

Sequence
(BLAST)

001: MSSWSGLAFV VASAVTGSAV TLAASAFYDL YFQRSYAFDI MPPDLSPGSR YIYTRAQNND KAERAITTCS VLSALDAGRA DPVVGRDDEI DRVVCILCRR
101: TKNCAALVGA AGVGKTAIVE GLAQRIAAGN VPDVLAGARI LELDMGAVVA GTRWRGMFEE RLKDAIKHAE EAGGKVILFI DELHMIVGAG DKGGPMDAAN
201: ILKPALARGR IRCVGATTCE EYHKYIQTDA ALERRFQKVV VEEPSVQGTI TILKGLKQRY QEHHGLKIQD DALVAAAQLA ARYITGRQFP DKAIDLIDEA
301: CSTAKVHFDK QKVENNMISS IFAPKELTVG PDHIAQVVSR CTRIPLTTLG QEEKEKLVHL AEKLHERVVG QDEAVNLVAQ AVLRSRVGFG RSSRPIGSFL
401: FLGPLGVGKT ELAKALAERI FDNEKALIRF DMSEYAESGS VSRLIGGPRS YEEGGQLTEK VKRCPYSIVL FDQVDKADPS IFKVFSQLLD DGMLTDGKGH
501: VVDFKNTIII MTSTLGAEQL TTRMGIENTV KAGRGLLMEQ VQKRLKPELI DRLSEVVIFE PLSHDELKEI VKIQMKDVIA TVANKGVSLF ITDAALDVIW
601: SESYHLVNGA RPMRRWVEKN VTTVLSNMLV NGEACEGSRI SIDAADVNRG LRYHVLKKQA STDP

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.