CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G123460.3	Barley	mitochondrion	47.08	70.86
Os02t0537400-01	Rice	cytosol	42.48	69.63
TraesCS7A01G456700.1	Wheat	mitochondrion	45.68	69.34
TraesCS5B01G554000.1	Wheat	cytosol	55.43	69.22
TraesCS3D01G090400.1	Wheat	mitochondrion	56.55	68.35
TraesCS7D01G445400.1	Wheat	cytosol	53.2	67.25
TraesCS7B01G357500.1	Wheat	cytosol	61.0	66.97
TraesCS3A01G090400.1	Wheat	cytosol	47.49	65.83
TraesCS2D01G136900.1	Wheat	cytosol	47.77	65.71
TraesCS1A01G304800.1	Wheat	cytosol	62.12	65.68
TraesCS4B01G046000.1	Wheat	cytosol	60.45	65.46
HORVU7Hr1G105530.1	Barley	cytosol	59.75	65.3
TraesCS7B01G357600.2	Wheat	cytosol	61.28	65.28
TraesCS5B01G422900.1	Wheat	cytosol	56.55	65.27
TraesCS4D01G046000.1	Wheat	cytosol	60.17	65.16
HORVU7Hr1G105430.1	Barley	cytosol	50.56	64.71
TraesCS4A01G267200.1	Wheat	cytosol, plastid	60.45	64.68
TraesCS4D01G047000.1	Wheat	cytosol	59.47	64.02
TraesCS4A01G324100.1	Wheat	cytosol	56.82	63.95
TraesCS5D01G429400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	59.05	63.57
TraesCS5D01G429500.1	Wheat	cytosol	59.19	63.53
TraesCS5B01G422800.1	Wheat	cytosol	59.05	63.38
HORVU5Hr1G102440.2	Barley	mitochondrion, plastid	58.36	62.72
TraesCS3A01G106800.1	Wheat	cytosol	55.01	62.4
TraesCS7B01G357400.1	Wheat	cytosol	57.94	62.37
HORVU5Hr1G102460.1	Barley	cytosol	13.37	62.34
HORVU1Hr1G068970.1	Barley	cytosol	62.12	61.86
TraesCS5A01G046800.1	Wheat	cytosol	42.06	61.63
TraesCS1B01G315600.1	Wheat	cytosol	62.95	61.58
TraesCS3A01G124200.1	Wheat	mitochondrion	49.03	61.22
TraesCS5D01G429700.1	Wheat	endoplasmic reticulum, mitochondrion, plastid	58.64	61.19
TraesCS5A01G062800.1	Wheat	mitochondrion	58.91	60.95
TraesCS7A01G048300.1	Wheat	cytosol	50.97	60.8
TraesCS5D01G429600.1	Wheat	mitochondrion	58.22	60.76
TraesCS5D01G074000.1	Wheat	mitochondrion	58.64	60.75
TraesCS7D01G045200.1	Wheat	extracellular, mitochondrion	44.43	60.65
TraesCS5B01G537100.1	Wheat	mitochondrion	56.55	60.15
TraesCS2B01G158300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	57.66	60.0
TraesCS7D01G045700.1	Wheat	endoplasmic reticulum	51.95	59.97
HORVU7Hr1G105270.3	Barley	cytosol	59.61	59.94
TraesCS5B01G423000.1	Wheat	cytosol	57.52	59.94
TraesCS7A01G048500.1	Wheat	endoplasmic reticulum	52.92	59.94
TraesCS7D01G445500.1	Wheat	cytosol	29.94	59.89
TraesCSU01G102300.1	Wheat	endoplasmic reticulum	51.81	59.81
TraesCSU01G102400.1	Wheat	endoplasmic reticulum	51.81	59.81
TraesCS7D01G045500.1	Wheat	endoplasmic reticulum	51.67	59.65
TraesCS7A01G050300.1	Wheat	endoplasmic reticulum	51.53	59.49
TraesCS7A01G050400.1	Wheat	endoplasmic reticulum	51.39	59.32
KRH63249	Soybean	mitochondrion	16.02	59.28
TraesCS4A01G324200.1	Wheat	cytosol	8.91	59.26
TraesCS4A01G436900.1	Wheat	endoplasmic reticulum	51.25	59.16
TraesCS4A01G437000.1	Wheat	endoplasmic reticulum, mitochondrion	49.16	59.03
TraesCS7D01G045400.1	Wheat	cytosol	40.53	59.03
HORVU7Hr1G008380.2	Barley	cytosol	23.96	58.9
OQU81585	Sorghum	cytosol	52.37	58.2
TraesCS7D01G042800.1	Wheat	plastid	52.09	58.16
TraesCS7D01G042900.1	Wheat	cytosol	51.95	58.01
TraesCSU01G064000.1	Wheat	plastid	51.95	58.01
HORVU7Hr1G035110.4	Barley	cytosol	35.52	57.95
TraesCSU01G211500.1	Wheat	cytosol	51.81	57.85
TraesCS7A01G048400.1	Wheat	cytosol	51.67	57.7
TraesCS7D01G046200.1	Wheat	cytosol	41.92	57.66
HORVU7Hr1G008940.2	Barley	cytosol	50.42	57.01
TraesCS4A01G443200.1	Wheat	cytosol	50.97	56.92
TraesCS4A01G443300.1	Wheat	plastid	50.84	56.77
TraesCS5B01G070000.1	Wheat	mitochondrion	37.47	56.75
TraesCS4A01G436600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	51.95	56.17
TraesCS5D01G254700.2	Wheat	mitochondrion	32.87	55.66
HORVU7Hr1G009000.2	Barley	cytosol	27.16	55.4
TraesCS7A01G050700.1	Wheat	extracellular	51.11	55.27
TraesCS6B01G278000.1	Wheat	cytosol	62.95	55.05
HORVU6Hr1G063810.3	Barley	plastid	21.31	54.26
TraesCS3D01G449000.1	Wheat	cytosol	20.75	53.6
HORVU4Hr1G008860.1	Barley	cytosol, peroxisome	16.3	53.42
TraesCS7A01G050600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	42.48	51.61
EES19828	Sorghum	nucleus	54.32	42.72
EES01468	Sorghum	nucleus	53.62	42.08
EES13207	Sorghum	cytosol	22.42	38.42
OQU79828	Sorghum	plastid	37.6	34.88
OQU81478	Sorghum	cytosol	40.25	33.96
KXG23307	Sorghum	plastid	42.34	33.01
EES12052	Sorghum	plastid	42.06	32.79
EER94678	Sorghum	plastid	43.87	32.04
EES06386	Sorghum	mitochondrion	43.59	31.62
EES05165	Sorghum	plastid	41.09	30.83

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1Z5RNB2	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlants:OQU85081	ProteinID:OQU85081	ProteinID:OQU85081.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	PANTHER:PTHR11638	PANTHER:PTHR11638:SF100	SMART:SM00382	SMART:SM01086
EnsemblPlantsGene:SORBI_3004G168200	SUPFAM:SSF52540	UniParc:UPI000B8BA6CC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:51877904..51882804

Molecular Weight (calculated)

78284.4 Da

IEP (calculated)

8.716

GRAVY (calculated)

-0.243

Length

718 amino acids

Sequence
(BLAST)

001: MTARTWQASA AARPSRRPPP PSTRCATATF PRQQRAPPVT GVVPRTSSSY LRLMRPRRST LLGSVRPSSG VLSMEGLAGR SASAPKAAPL GKHATWEKYG
101: RDITADAGKM DPVIGRDEEI DRVVCILSRR TKNSAMLVGA PGVGKTAIAE GLAQRIAAGA VPAPLVGARV VEVDLGAMVA GTQYRGMFEE RMKKVIQQAE
201: AADGKVVLFI DEVHMLLGAG QTKDGSMDGA NLLKPALARG RIRCIGATTF DEHRKYVEKD AAFERRFQKV HVQEPSVPAT IDILQGLKKK YEEHHGAAIQ
301: DAAIVAAAQL ANRYITGRQF PDKAIDLIDE ACATARMQKD NILKGSTAHL LPENAANEAI VSPGQIAEVV SRWTGIPVNT LDKDEKERLM HLADRLRERV
401: VGQEAAVNSV AQAVLRSRAG LDQPGQPIGS FLFLGSTGVG KTELAKALAE QLFDSEKMLV RFDMSEFVGT HSVLRLIGAP PSYHGHQDGG QLTEKVRQKP
501: YSVILFDEIE KADPAVFNVL LQLLDDGLLT DGKGRIVDFK NTIIIMTSNL GAEYLMEAIS GEKTMEAARD LVIKQAQKHF RPEFLNRLSE LVVFEPLSQD
601: KRREVANIHM KGIIARAANK GITLSASDAA LDVVLSESDD PHYGARPIRR WLQKNVMTKL SEMLFKGEID ADTAVIIDAC DDKKCLKYEV VKNVPTSEAL
701: HRRLVVEIPS DSDSDDDL

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.