CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79828	Sorghum	plastid	57.52	31.14
KXG23307	Sorghum	plastid	62.05	28.23
EES12052	Sorghum	plastid	61.81	28.12
HORVU4Hr1G014120.2	Barley	plastid	62.29	27.83
TraesCS4D01G081100.1	Wheat	plastid	60.86	27.13
TraesCS4A01G232800.1	Wheat	plastid	60.62	27.08
TraesCS4B01G083000.1	Wheat	plastid	60.62	27.02
OQU81585	Sorghum	cytosol	35.8	23.22
OQU85081	Sorghum	mitochondrion, plastid	38.42	22.42
OQU81478	Sorghum	cytosol	42.96	21.15
EER94678	Sorghum	plastid	44.39	18.92
EES05165	Sorghum	plastid	43.2	18.91
EES01468	Sorghum	nucleus	40.81	18.69
EES06386	Sorghum	mitochondrion	44.15	18.69
EES19828	Sorghum	nucleus	40.57	18.62

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8068516	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
UniProt:C5YLH6	InterPro:ClpA/B	InterPro:Clp_ATPase_C	EnsemblPlants:EES13207	ProteinID:EES13207	ProteinID:EES13207.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	PANTHER:PTHR43572	PANTHER:PTHR43572:SF21	SMART:SM00382	SMART:SM01086
EnsemblPlantsGene:SORBI_3007G006000	SUPFAM:SSF52540	UniParc:UPI0001A876CC	RefSeq:XP_002443712.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:511209..512603

Molecular Weight (calculated)

46761.2 Da

IEP (calculated)

9.215

GRAVY (calculated)

-0.420

Length

419 amino acids

Sequence
(BLAST)

001: MEENGRRPQG WCVRWIVGAL PVSELFSPVK EKNDAVRNES YKRAKELRDR ELELNKSLTK KKSNKEMIST HEVKNKNHGM SSTGPVVTEE DIRRIVSSWT
101: GVPVQKLSVD ETNRLLSMEQ TLHQRVIGQD EAVTAISRAI RRSHAGLNEP CRPIGSFMFA GPTGVGKTEL AKAVAAFYYG SEAAMIRLDM SEFMNRYSVS
201: RLIGSAPGYI DDSNGGQLTE AVRRRPHTLI LFDEVEKAHP DVFNVMLQIL DDGRLTDGKG RTVDFKNTLI VMTSNIGGDI VVANGGDGAG VGYDRIKDMV
301: GEEMKRHFRP EFLNRLDETI VFRQLTKVEV KKIAGIMLEN VAARGRKKGI KLQVTDRFRD LVVDEGFDTS YGVRPLKRAI QRLLEDTLAD KMLAGEIKDG
401: DSVAVDADLT GNVVFRHQA

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.