CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	EES09373	AT4G09570.1	19130088
AT5G50920.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	13.57	98.43
Zm00001d024009_P001	Maize	plastid	98.26	98.26
Os12t0230100-01	Rice	plastid	96.2	96.41
TraesCS5A01G118900.1	Wheat	unclear	92.4	92.5
TraesCS5D01G118700.1	Wheat	plastid	92.07	92.17
TraesCS5B01G112500.1	Wheat	plastid	92.07	92.17
CDX84888	Canola	cytosol	81.32	90.57
GSMUA_Achr6P08040_001	Banana	cytosol	63.3	90.53
CDY64710	Canola	cytosol	79.7	89.29
EES12052	Sorghum	plastid	87.3	87.3
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	92.07	87.15
GSMUA_Achr3P18630_001	Banana	plastid	84.8	86.49
PGSC0003DMT400037527	Potato	cytosol	85.88	85.7
Solyc12g042060.1.1	Tomato	plastid	85.88	85.7
KRH54115	Soybean	plastid	85.23	85.14
KRH63851	Soybean	plastid	85.12	85.03
KRH59753	Soybean	endoplasmic reticulum	84.58	84.77
GSMUA_Achr6P16470_001	Banana	plastid	80.56	84.7
Solyc03g118340.2.1	Tomato	nucleus	85.12	84.67
PGSC0003DMT400036961	Potato	plastid	84.91	84.54
KRH41069	Soybean	mitochondrion, plastid	83.93	84.11
Bra018030.1-P	Field mustard	mitochondrion	81.0	84.01
AT5G50920.1	Thale cress	plastid	84.15	83.42
Bra022751.1-P	Field mustard	plastid	83.93	83.21
PGSC0003DMT400054236	Potato	plastid	82.19	83.19
CDX68504	Canola	mitochondrion	83.71	83.08
Bra029922.1-P	Field mustard	mitochondrion	83.5	82.87
CDX83052	Canola	mitochondrion	83.39	82.85
CDY45800	Canola	plastid	82.84	82.84
CDY05878	Canola	mitochondrion	83.39	82.4
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	85.23	80.02
AT3G48870.3	Thale cress	cytosol, plastid	81.98	79.31
EES13207	Sorghum	cytosol	28.23	62.05
GSMUA_AchrUn_...	Banana	plastid	78.72	61.91
PGSC0003DMT400037525	Potato	plastid	16.61	60.24
VIT_07s0005g05810.t01	Wine grape	cytosol	4.34	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	4.34	58.82
OQU79828	Sorghum	plastid	47.88	56.98
OQU81478	Sorghum	cytosol	42.45	45.95
EES05165	Sorghum	plastid	44.08	42.42
OQU85081	Sorghum	mitochondrion, plastid	33.01	42.34
EES06386	Sorghum	mitochondrion	43.54	40.51
OQU81585	Sorghum	cytosol	28.34	40.4
EER94678	Sorghum	plastid	42.56	39.88
EES19828	Sorghum	nucleus	38.11	38.44
EES01468	Sorghum	nucleus	38.11	38.36

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	UniProt:A0A1B6PCG3	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628
EnsemblPlants:KXG23307	ProteinID:KXG23307	ProteinID:KXG23307.1	ProteinID:KXG23308.1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
EnsemblPlantsGene:SORBI_3008G081900	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00022072B1	InterPro:UVR_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:14626347..14632978

Molecular Weight (calculated)

102073.0 Da

IEP (calculated)

6.913

GRAVY (calculated)

-0.311

Length

921 amino acids

Sequence
(BLAST)

001: MAGTLLQSVA LGTTFGGRIS TQRWRSHGAR RPASMLAMSL SRPVKMSAFV GLRSVHSFSV TPTVSNSRST VASYRSSRRT RRSRFVTRAM FERFTEKAIK
101: VIMLAQEEAR RLGHNFVGTE QILLGLIGEG TGIAAKVLKS MGINLKDARV EVEKIIGRGN GFVAVEIPFT PRAKRVLELS LEEARQLGHN YIGSEHLLLG
201: LLREGEGVAA RVLESLGADP SNIRTQVIRM IGETTEAVGA GVGGGSSGNK MPTLEEYGTN LTKLAEEGKL DPVVGRQPQI ERVVQILGRR TKNNPCLIGE
301: PGVGKTAIAE GLAQRISTGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QSDEIILFID EVHTLIGAGA AEGAIDAANI LKPALARGEL
401: QCIGATTLDE YRKHIEKDPA LERRFQPVKV PEPTVDETIE ILRGLRERYE IHHKLRYTDE ALIAAAKLSY QYISDRFLPD KAIDLIDEAG SRVRLQHAQV
501: PEEARELDKE LKQITKQKNE AVRSQDFEKA GELRDREMEL KAQITAFIDK SKELSKAEEE SGETGPMVNE ADIQHIVSSW TGIPVEKVSS DESDKLLKME
601: ETLHTRVIGQ DEAVVAISRS IRRARVGLKN PNRPIASFIF AGPTGVGKSE LAKALAAYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY VGYTEGGQLT
701: EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRKIG FDLDSDEKDS SYSRIKSLVI EEMKQYFRPE
801: FLNRLDEMIV FRQLTKLEVK EIAEIMLKEV FDRLKAKDIN LQVTEKFKER VVDEGYNPSY GARPLRRAIM RLLEDSLAEK MLAGEVKEGD SAIVDVDSEG
901: KVVVLNGQGG IPELSTPAIT V

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.