Factsheet for Bra018030.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64710	Canola	cytosol	89.86	97.08
GSMUA_Achr6P08050_001	Banana	cytosol	13.63	95.28
CDY05878	Canola	mitochondrion	99.44	94.74
Bra029922.1-P	Field mustard	mitochondrion	97.41	93.21
GSMUA_Achr6P08040_001	Banana	cytosol	63.06	86.96
AT3G48870.3	Thale cress	cytosol, plastid	92.45	86.24
Bra022751.1-P	Field mustard	plastid	88.18	84.28
Solyc12g042060.1.1	Tomato	plastid	86.71	83.42
KRH54115	Soybean	plastid	86.6	83.41
PGSC0003DMT400037527	Potato	cytosol	86.6	83.32
KRH63851	Soybean	plastid	86.49	83.3
KRH59753	Soybean	endoplasmic reticulum	86.04	83.13
KRH41069	Soybean	mitochondrion, plastid	85.81	82.92
PGSC0003DMT400036961	Potato	plastid	86.15	82.7
GSMUA_Achr3P18630_001	Banana	plastid	83.67	82.28
Os04t0397100-01	Rice	plastid	37.27	82.13
GSMUA_Achr6P16470_001	Banana	plastid	80.97	82.08
Solyc03g118340.2.1	Tomato	nucleus	85.59	82.07
PGSC0003DMT400054236	Potato	plastid	83.67	81.65
HORVU2Hr1G071080.3	Barley	plastid	84.12	81.46
TraesCS2B01G304200.1	Wheat	golgi	84.12	81.46
TraesCS2D01G285800.1	Wheat	plastid	84.12	81.46
TraesCS6D01G183600.2	Wheat	cytosol, plastid	84.01	81.44
Zm00001d003894_P004	Maize	plastid	84.46	81.43
TraesCS6A01G195200.1	Wheat	plastid	83.9	81.33
Zm00001d025273_P019	Maize	plastid	84.35	81.32
EES12052	Sorghum	plastid	84.23	81.22
TraesCS6B01G233800.1	Wheat	plastid	83.67	81.11
TraesCS2A01G287300.2	Wheat	plastid	81.64	81.01
KXG23307	Sorghum	plastid	84.01	81.0
Os12t0230100-01	Rice	plastid	83.56	80.74
Zm00001d024009_P001	Maize	plastid	83.56	80.56
TraesCS5A01G118900.1	Wheat	unclear	82.55	79.67
GSMUA_Achr8P09160_001	Banana	plastid	82.77	79.55
TraesCS5D01G118700.1	Wheat	plastid	82.32	79.46
TraesCS5B01G112500.1	Wheat	plastid	82.21	79.35
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	86.6	78.39
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	81.53	74.41
TraesCS4B01G082900.1	Wheat	mitochondrion	52.36	61.75
GSMUA_AchrUn_...	Banana	plastid	77.25	58.58
Bra029193.1-P	Field mustard	plastid	44.71	42.1
Bra032044.1-P	Field mustard	mitochondrion	37.61	42.07
Bra023518.1-P	Field mustard	plastid	43.02	39.67
Bra003807.1-P	Field mustard	nucleus	38.85	39.12
Bra007816.1-P	Field mustard	mitochondrion	42.68	38.91
Bra008698.1-P	Field mustard	plastid	42.45	38.75
Bra015922.1-P	Field mustard	nucleus	39.64	38.64

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra018030	EnsemblPlants:Bra018030.1	EnsemblPlants:Bra018030.1-P	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
InterPro:IPR001943	InterPro:IPR036628	UniProt:M4DNE3	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000253F298	InterPro:UVR_dom	SEG:seg	:	:

Description

AT3G48870 (E=0.0) ATCLPC, ATHSP93-III, HSP93-III | HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding

Coordinates

chrA06:+:9623342..9626737

Molecular Weight (calculated)

99162.5 Da

IEP (calculated)

7.124

GRAVY (calculated)

-0.378

Length

888 amino acids

Sequence
(BLAST)

001: MARLLANSTS RSLLGSGRDF QSEDYRKPRR CVKMMYTSQT SVLSIQSFSG LRASNALDRV ARPSHDFFGK VNLQMSSSRR EKASRGVTKA MFERFTEKAI
101: KVIMLSQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDSR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLENLGVD ASNIRTQVIR MVGENNEVTA SVGGGSSGNS KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVVQILAR RTKNNPCLIG
301: EPGVGKTAIA EGLAQRIASG DVPETIEGKT VITLDMGLLV AGTKYRGEFE ERLKKLMEEI RQSDDIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE
401: LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDEAI QILHGLRERY EIHHKLRYTD EALVAAAQLS HQYISDRFLP DKAIDLIDEA GSRVRLRHAQ
501: VPEEARELER QLRQITKEKN EAVRGQDFEK AGSHRDREIE LRAEIAAVLA KGKEVNKAET EAGEEGGPTV TESDIQHIVS TWTGIPVEKV SSDESSRLLK
601: MEQTLHTRVI GQDEAVKAIS RAIRRARVGL KNPNRPIASF IFSGPTGVGK SELAKALAAY YFGSEEAMIR LDMSEFMERH TVSKLIGSPP GYVGYTEGGQ
701: LTEAVRRRPY TLVLFDEIEK AHPDVFNMML QILEDGRLTD SKGRTVDFKN TLLIMTSNVG SSVIEKGGRR IGFDLDYDEK DSSYNRIKSL VTEELKQYFR
801: PEFLNRLDEM IVFRQLTKLE VKEIADIMLK EVVVRLKDKE IELQVTERFK ERVVDEGFDP SYGARPLRRA IMRLLEDSMA EKMLSREI

Best Arabidopsis Sequence Match ( AT3G48870.2 )
(BLAST)

001: MKMSSLKAPV LRIQATEYRE PRGRVKMMSS LQAPLLTIQS FSGLRAPSAL DYLGRPSPGF LVKYKLAKSS GREKASRCVP KAMFERFTEK AIKVIMLSQE
101: EARRLGHNFV GTEQILLGLI GEGTGIAAKV LKSMGINLKD SRVEVEKIIG RGSGFVAVEI PFTPRAKRVL ELSLEEARQL GHNYIGSEHL LLGLLREGEG
201: VAARVLENLG ADPSNIRTQV IRMVGENNEV TASVGGGSSG NSKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL ARRTKNNPCL IGEPGVGKTA
301: IAEGLAQRIA SGDVPETIEG KTVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR GELQCIGATT
401: IDEYRKHIEK DPALERRFQP VKVPEPTVEE AIQILQGLRE RYEIHHKLRY TDEALVAAAQ LSHQYISDRF LPDKAIDLID EAGSRVRLRH AQLPEEAREL
501: EKQLRQITKE KNEAVRSQDF EMAGSHRDRE IELKAEIANV LSRGKEVAKA ENEAEEGGPT VTESDIQHIV ATWTGIPVEK VSSDESSRLL QMEQTLHTRV
601: IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG QLTEAVRRRP
701: YTLVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDHDE KDSSYNRIKS LVTEELKQYF RPEFLNRLDE
801: MIVFRQLTKL EVKEIADIML KEVVARLEVK EIELQVTERF KERVVDEGFD PSYGARPLRR AIMRLLEDSM AEKMLSRDIK EGDSVIVDVD AEGSVVVLSG
901: TTGRVGGFAA EEAMEDPIPI L

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.