Factsheet for AT3G48870.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	12.92	96.85
CDY64710	Canola	cytosol	83.51	96.72
Bra018030.1-P	Field mustard	mitochondrion	86.24	92.45
Bra029922.1-P	Field mustard	mitochondrion	89.92	92.24
CDX68504	Canola	mitochondrion	89.92	92.24
CDX83052	Canola	mitochondrion	89.6	92.02
CDY05878	Canola	mitochondrion	89.5	91.42
GSMUA_Achr6P08040_001	Banana	cytosol	59.03	87.27
AT5G50920.1	Thale cress	plastid	83.82	85.9
KRH63851	Soybean	plastid	82.25	84.92
KRH54115	Soybean	plastid	82.14	84.82
Solyc12g042060.1.1	Tomato	plastid	82.14	84.72
KRH59753	Soybean	endoplasmic reticulum	81.72	84.66
PGSC0003DMT400037527	Potato	cytosol	82.04	84.62
KRH41069	Soybean	mitochondrion, plastid	81.51	84.44
Os04t0397100-01	Rice	plastid	35.61	84.12
GSMUA_Achr3P18630_001	Banana	plastid	79.52	83.83
PGSC0003DMT400036961	Potato	plastid	80.88	83.24
Solyc03g118340.2.1	Tomato	nucleus	80.88	83.15
TraesCS2D01G285800.1	Wheat	plastid	79.31	82.33
TraesCS2B01G304200.1	Wheat	golgi	79.31	82.33
HORVU2Hr1G071080.3	Barley	plastid	79.31	82.33
PGSC0003DMT400054236	Potato	plastid	78.68	82.31
GSMUA_Achr6P16470_001	Banana	plastid	75.63	82.19
TraesCS6D01G183600.2	Wheat	cytosol, plastid	78.89	81.99
KXG23307	Sorghum	plastid	79.31	81.98
TraesCS6A01G195200.1	Wheat	plastid	78.78	81.88
EES12052	Sorghum	plastid	79.2	81.87
TraesCS2A01G287300.2	Wheat	plastid	76.89	81.79
TraesCS6B01G233800.1	Wheat	plastid	78.57	81.66
Zm00001d003894_P004	Maize	plastid	78.99	81.65
Zm00001d024009_P001	Maize	plastid	78.89	81.54
Zm00001d025273_P019	Maize	plastid	78.89	81.54
Os12t0230100-01	Rice	plastid	78.47	81.28
TraesCS5A01G118900.1	Wheat	unclear	77.42	80.11
TraesCS5B01G112500.1	Wheat	plastid	77.42	80.11
TraesCS5D01G118700.1	Wheat	plastid	77.31	80.0
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	82.35	79.92
GSMUA_Achr8P09160_001	Banana	plastid	77.21	79.55
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	76.79	75.13
AT3G45450.1	Thale cress	cytosol	23.11	64.52
TraesCS4B01G082900.1	Wheat	mitochondrion	49.79	62.95
GSMUA_AchrUn_...	Banana	plastid	73.42	59.69
AT5G51070.1	Thale cress	plastid	42.65	42.96
AT2G25140.1	Thale cress	mitochondrion	39.81	39.32
AT4G14670.1	Thale cress	cytosol	25.63	39.17
AT5G15450.1	Thale cress	plastid	39.71	39.05
AT1G74310.1	Thale cress	nucleus	36.87	38.53
AT4G14675.1	Thale cress	cytosol	3.36	20.13

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	EntrezGene:824048	InterPro:AAA+_ATPase
EMBL:AB022324	ProteinID:AEE78466.1	ProteinID:ANM63380.1	ProteinID:ANM63381.1	ArrayExpress:AT3G48870	EnsemblPlantsGene:AT3G48870
RefSeq:AT3G48870	TAIR:AT3G48870	RefSeq:AT3G48870-TAIR-G	EnsemblPlants:AT3G48870.3	Symbol:ATCLPC	InterPro:ATPase_AAA_core
EMBL:AY056787	Unigene:At.23421	ProteinID:CAB87915.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0019538
GO:GO:0031969	GO:GO:0034214	GO:GO:0042803	GO:GO:0045037	Symbol:HSP93-III	InterPro:IPR001943
InterPro:IPR036628	RefSeq:NP_001325472.1	RefSeq:NP_001325473.1	RefSeq:NP_566912.2	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	UniProt:Q9SXJ7	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00000AA4E7	InterPro:UVR_dom	SEG:seg

Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]

Coordinates

chr3:-:18122118..18126664

Molecular Weight (calculated)

105746.0 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.311

Length

952 amino acids

Sequence
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.