Factsheet for Os12t0230100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
extracellular: 23159799
plastid: 27126603
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 27126603 doi

Y Wang, K Ji, S Shen, H Chen

Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	Os11t0171500-01	AT4G09570.1	19130088
AT5G50920.1	Os12t0169800-00	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	13.6	98.43
KXG23307	Sorghum	plastid	96.41	96.2
Zm00001d024009_P001	Maize	plastid	95.32	95.11
TraesCS5A01G118900.1	Wheat	unclear	93.8	93.7
Os04t0397100-01	Rice	plastid	41.02	93.55
TraesCS5D01G118700.1	Wheat	plastid	93.47	93.37
TraesCS5B01G112500.1	Wheat	plastid	93.47	93.37
GSMUA_Achr6P08040_001	Banana	cytosol	63.55	90.68
CDX84888	Canola	cytosol	81.28	90.33
CDY64710	Canola	cytosol	79.76	89.17
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	93.69	88.49
GSMUA_Achr3P18630_001	Banana	plastid	84.66	86.16
Solyc12g042060.1.1	Tomato	plastid	85.75	85.37
PGSC0003DMT400037527	Potato	cytosol	85.75	85.37
KRH54115	Soybean	plastid	85.42	85.14
KRH63851	Soybean	plastid	85.2	84.92
KRH59753	Soybean	endoplasmic reticulum	84.87	84.87
Solyc03g118340.2.1	Tomato	nucleus	84.98	84.34
KRH41069	Soybean	mitochondrion, plastid	84.33	84.33
PGSC0003DMT400036961	Potato	plastid	84.77	84.22
GSMUA_Achr6P16470_001	Banana	plastid	80.2	84.13
Bra018030.1-P	Field mustard	mitochondrion	80.74	83.56
AT5G50920.1	Thale cress	plastid	84.22	83.32
Bra022751.1-P	Field mustard	plastid	84.0	83.1
PGSC0003DMT400054236	Potato	plastid	82.26	83.08
CDY45800	Canola	plastid	82.81	82.63
CDX68504	Canola	mitochondrion	83.35	82.54
Bra029922.1-P	Field mustard	mitochondrion	83.13	82.33
CDX83052	Canola	mitochondrion	83.03	82.31
CDY05878	Canola	mitochondrion	83.03	81.87
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	85.85	80.43
AT3G48870.3	Thale cress	cytosol, plastid	81.28	78.47
Os11t0267400-01	Rice	plasma membrane	71.82	70.82
GSMUA_AchrUn_...	Banana	plastid	78.89	61.91
Os11t0269000-00	Rice	cytosol, plasma membrane	26.44	61.68
PGSC0003DMT400037525	Potato	plastid	16.65	60.24
VIT_07s0005g05810.t01	Wine grape	cytosol	4.35	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	4.35	58.82
Os02t0526400-01	Rice	cytosol, plasma membrane	41.02	45.86
Os02t0537400-01	Rice	cytosol	19.37	40.64
Os02t0181900-01	Rice	mitochondrion	42.98	40.18
Os03t0426900-01	Rice	plastid	42.55	39.98
Os05t0519700-01	Rice	nucleus	38.19	38.49
Os02t0297132-00	Rice	cytosol	15.45	37.67

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	EntrezGene:4351828	InterPro:AAA+_ATPase
ProteinID:ABA96309.2	ProteinID:ABG21929.1	EMBL:AK066153	InterPro:ATPase_AAA_core	ProteinID:BAF29461.1	ProteinID:BAT16428.1
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	EnsemblPlantsGene:Os12g0230100
EnsemblPlants:Os12t0230100-01	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572
PANTHER:PTHR43572:SF19	UniProt:Q2QVG9	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923
UniParc:UPI0000D89CAB	InterPro:UVR_dom	RefSeq:XP_015620084.1	RefSeq:XP_015620085.1	SEG:seg	:

Description

CLPC2Similar to ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor (Fragment). (Os12t0230100-01)

Coordinates

chr12:-:7095860..7101608

Molecular Weight (calculated)

102023.0 Da

IEP (calculated)

7.065

GRAVY (calculated)

-0.317

Length

919 amino acids

Sequence
(BLAST)

001: MAGTLLQPVA LGTTFAGRVS GQRWKSHGTR RPPSMLAMSL SRPVKMAAFV GLRSVHSFSV TPVTNFRSTV ASYRSRRGRR ARFVTRSMFE RFTEKAIKVI
101: MLAQEEARRL GHNFVGTEQI LLGLIGEGTG IAAKVLKSMG INLKDARVEV EKIIGRGNGF VAVEIPFTPR AKRVLELSLE EARQLGHNYI GSEHLLLGLL
201: REGEGVAARV LESLGADPSN IRTQVIRMIG ETTEAVGAGV GGGSSGNKMP TLEEYGTNLT KLAEEGKLDP VVGRQPQIER VVQILGRRTK NNPCLIGEPG
301: VGKTAIAEGL AQRISTGDVP ETIEGKKVIT LDMGLLVAGT KYRGEFEERL KKLMEEIKQS DEIILFIDEV HTLIGAGAAE GAIDAANILK PALARGELQC
401: IGATTLDEYR KHIEKDPALE RRFQPVRVPE PTVDETIEIL RGLRERYEIH HKLRYTDDAL ISAAKLSYQY ISDRFLPDKA IDLIDEAGSR VRLRHAQVPE
501: EARELDKELK QITKDKNEAV RSQDFEKAGE LRDREMELKA QITALIDKSK EMSKAETESG ETGPLVNEAD IQHIVSSWTG IPVEKVSSDE SDKLLKMEET
601: LHQRVIGQDE AVKAISRSIR RARVGLKNPN RPIASFIFAG PTGVGKSELA KALAAYYFGS EEAMIRLDMS EFMERHTVSK LIGSPPGYVG YTEGGQLTEA
701: VRRRPYTVVL FDEIEKAHPD VFNMMLQILE DGRLTDSKGR TVDFKNTLLI MTSNVGSSVI EKGGRKIGFD LDYDEKDSSY SRIKSLVVEE MKQYFRPEFL
801: NRLDEMIVFR QLTKLEVKEI AEIMLKEVFD RLKAKDIDLQ VTEKFKERIV DEGFNPSYGA RPLRRAIMRL LEDSLAEKML AGEVKEGDSA IVDVDSEGKV
901: IVLNGQSGLP ELSTPAVTV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.