Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0397100-01 | Rice | plastid | 59.9 | 58.56 |
| Os02t0297132-00 | Rice | cytosol | 36.55 | 38.2 |
| Os02t0537400-01 | Rice | cytosol | 36.29 | 32.65 |
| OQU79828 | Sorghum | plastid | 58.63 | 29.84 |
| Os11t0267400-01 | Rice | plasma membrane | 64.21 | 27.15 |
| Os12t0230100-01 | Rice | plastid | 61.68 | 26.44 |
| HORVU4Hr1G014120.2 | Barley | plastid | 62.94 | 26.44 |
| TraesCS4D01G081100.1 | Wheat | plastid | 61.42 | 25.74 |
| TraesCS4A01G232800.1 | Wheat | plastid | 61.17 | 25.69 |
| TraesCS4B01G083000.1 | Wheat | plastid | 61.17 | 25.64 |
| Os02t0526400-01 | Rice | cytosol, plasma membrane | 43.15 | 20.68 |
| Os05t0519700-01 | Rice | nucleus | 42.13 | 18.2 |
| Os02t0181900-01 | Rice | mitochondrion | 44.92 | 18.01 |
| Os03t0426900-01 | Rice | plastid | 44.67 | 18.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A0P0Y137 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core |
| ProteinID:BAT13549.1 | InterPro:ClpA/B | InterPro:ClpA/B_CS2 | InterPro:Clp_ATPase_C | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:Os11g0269000 | EnsemblPlants:Os11t0269000-00 | InterPro:P-loop_NTPase | PFAM:PF07724 |
| PFAM:PF10431 | PRINTS:PR00300 | ScanProsite:PS00871 | PANTHER:PTHR43572 | PANTHER:PTHR43572:SF21 | SMART:SM00382 |
| SMART:SM01086 | SUPFAM:SSF52540 | UniParc:UPI0003938F7D | SEG:seg | : | : |
Description
CLASS I CLP ATPASE C4Similar to ATP-dependent clp protease. (Os11t0269000-00)
Coordinates
chr11:-:9296778..9297962
Molecular Weight (calculated)
43520.5 Da
IEP (calculated)
6.880
GRAVY (calculated)
-0.288
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSIQIMQL TESNFNPEQA KQLRDHELQL RTNISALTDK KTQMMEPDAI AMPVVTEDDV RHAISRWTGV PLHKVSMDES RKLLKLEEAL HRRVVGQGEA
101: VAAVSRAIRR ARLGLKHPGR PVASLVFAGP TGVGKSELAK ALAAYYYGSS ESEEAAMVRL DMSEYMEKHA VARLVGSPPG YVWHGEGGQL TEAVRRRPHA
201: VVLLDEVEKA HRDVFDLLLQ VLDDGRLTDG KGRTVDFKNT LIVMTTNIGS SLIVNNGGDG AAAAGRIKNT VTDEMKRHFR PEFLNRLDEV IMFQPLTELE
301: VGKIAGIMLE EFAGRVREKG IKLKVTDKFR ELVVEEGFDP SYGARPLRRA VVRLLEDTLA EKMLAGEVRE GDSVIVDADS AGNAVVRRSN AMPA
101: VAAVSRAIRR ARLGLKHPGR PVASLVFAGP TGVGKSELAK ALAAYYYGSS ESEEAAMVRL DMSEYMEKHA VARLVGSPPG YVWHGEGGQL TEAVRRRPHA
201: VVLLDEVEKA HRDVFDLLLQ VLDDGRLTDG KGRTVDFKNT LIVMTTNIGS SLIVNNGGDG AAAAGRIKNT VTDEMKRHFR PEFLNRLDEV IMFQPLTELE
301: VGKIAGIMLE EFAGRVREKG IKLKVTDKFR ELVVEEGFDP SYGARPLRRA VVRLLEDTLA EKMLAGEVRE GDSVIVDADS AGNAVVRRSN AMPA
001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL
Arabidopsis Description
CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.