Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G081860.1 | Barley | cytosol | 81.27 | 87.43 |
| Zm00001d016664_P001 | Maize | plastid | 88.44 | 76.77 |
| EES05165 | Sorghum | plastid | 89.17 | 76.59 |
| TraesCS5A01G321300.1 | Wheat | plastid | 85.89 | 76.24 |
| TraesCS5B01G321800.1 | Wheat | plastid | 85.77 | 76.05 |
| TraesCS5D01G328100.1 | Wheat | plastid | 85.89 | 75.91 |
| GSMUA_Achr6P23780_001 | Banana | cytosol | 68.73 | 66.86 |
| VIT_19s0014g00020.t01 | Wine grape | plastid | 65.09 | 56.55 |
| GSMUA_Achr10P... | Banana | plastid | 68.0 | 56.41 |
| CDY38846 | Canola | plastid | 63.14 | 55.75 |
| Bra029193.1-P | Field mustard | plastid | 63.63 | 55.46 |
| CDY32646 | Canola | plastid | 62.9 | 55.35 |
| CDX71686 | Canola | plastid | 62.65 | 55.26 |
| AT5G51070.1 | Thale cress | plastid | 63.5 | 55.24 |
| Solyc03g117950.2.1 | Tomato | nucleus | 63.14 | 53.84 |
| PGSC0003DMT400036893 | Potato | plastid | 63.14 | 53.78 |
| KRH63903 | Soybean | plastid | 61.44 | 53.38 |
| KRH54048 | Soybean | plastid | 61.19 | 52.95 |
| Os04t0397100-01 | Rice | plastid | 23.97 | 48.88 |
| Os11t0269000-00 | Rice | cytosol, plasma membrane | 20.68 | 43.15 |
| Os12t0230100-01 | Rice | plastid | 45.86 | 41.02 |
| Os02t0537400-01 | Rice | cytosol | 21.05 | 39.5 |
| Os11t0267400-01 | Rice | plasma membrane | 43.07 | 37.98 |
| Os02t0297132-00 | Rice | cytosol | 17.15 | 37.4 |
| Os05t0519700-01 | Rice | nucleus | 38.93 | 35.09 |
| Os03t0426900-01 | Rice | plastid | 40.88 | 34.36 |
| Os02t0181900-01 | Rice | mitochondrion | 39.9 | 33.37 |
Protein Annotations
| Gene3D:1.10.1780.10 | Gene3D:1.10.8.60 | MapMan:19.4.2.9.5 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core |
| InterPro:ClpA/B | InterPro:ClpA/B_CS1 | InterPro:ClpA/B_CS2 | InterPro:Clp_ATPase_C | InterPro:Clp_N | InterPro:Clp_N_dom_sf |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009628 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016887 |
| GO:GO:0019538 | GO:GO:0034214 | GO:GO:0034605 | GO:GO:0042803 | GO:GO:1901002 | GO:GO:1902584 |
| InterPro:IPR036628 | EnsemblPlantsGene:Os02g0526400 | EnsemblPlants:Os02t0526400-01 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02861 |
| PFAM:PF07724 | PFAM:PF10431 | PRINTS:PR00300 | ScanProsite:PS00870 | ScanProsite:PS00871 | PANTHER:PTHR43572 |
| PANTHER:PTHR43572:SF17 | SMART:SM00382 | SMART:SM01086 | SUPFAM:SSF52540 | SUPFAM:SSF81923 | UniParc:UPI0003938F5B |
| SEG:seg | : | : | : | : | : |
Description
CLASS I CLP ATPASE D1Similar to ATP-dependent Clp protease ATP-binding subunit. (Os02t0526400-01)
Coordinates
chr2:+:19251968..19256233
Molecular Weight (calculated)
89967.5 Da
IEP (calculated)
5.579
GRAVY (calculated)
-0.175
Length
822 amino acids
Sequence
(BLAST)
(BLAST)
001: GGFLSSGINI ERAREECRGI GARDLTPGAP SPSGSGLEMD IPFSGSCKRV FEVAVEFSRN MGCSFISPEH LALALFTLDD PTTNSLLRSL GADPSQLASV
101: ALTRLQAELA KDCREPAGAS SFKVPKKSPA GAGRSAFSKS LNSKKEKGAL DQFCLDLTTQ ASGGFIDPII GREEEIERVV QIICRRTKNN PILLGEAGVG
201: KTAIAEGLAL RIANGDVPIY LVAKRIMSLD VGLLIAGAKE RGELESRVTS LIREVREAGD VILFIDEVHN LIGSGTVGKG KGAGLDIGNL LKPPLARGEL
301: QCIAATTLDE HRMHFEKDKA LARRFQPVLV EEPSQDDAVK ILLGLREKYE TYHKCKFTLE AINAAVYLSA RYIPDRQLPD KAIDLIDEAG SRARMESFNR
401: KKEGQSSILL KSPDEYWQEI RAAQNMHEVV SSNQMKYSPR QENGSAAIKA PSEDMNELTS ELQVEEPIVV GTEEIARVAS LWSGIPVQQL TADDRKLLVG
501: LDGELRKRVI GQDDAVMAIS RAVKRSRVGL NDPDRPIATL LFCGPTGVGK TELTKALAAS YFGSESAMLR LDMSEYMERH TVSKLIGSPP GYIGYGETGT
601: LTEAVRRKPF TVVLLDEIEK AHPDIFNILL QIFEDGHLSD SQGRRVSFKN TLIVMTSNIG STSISKGRRS MGFMTEDTES SSYVAMKSLV MEELKAFFRP
701: ELLNRIDEMV VFRPLEKTQM LAILDIILQE VKGRLLALGI GLEVSDAMKD LICEEGYDKS YGARPLRRAV THLIEDVISE AILFGEYKPG DTILMDIDAG
801: GKLCMSHLNE KVVQLSDPTR TF
101: ALTRLQAELA KDCREPAGAS SFKVPKKSPA GAGRSAFSKS LNSKKEKGAL DQFCLDLTTQ ASGGFIDPII GREEEIERVV QIICRRTKNN PILLGEAGVG
201: KTAIAEGLAL RIANGDVPIY LVAKRIMSLD VGLLIAGAKE RGELESRVTS LIREVREAGD VILFIDEVHN LIGSGTVGKG KGAGLDIGNL LKPPLARGEL
301: QCIAATTLDE HRMHFEKDKA LARRFQPVLV EEPSQDDAVK ILLGLREKYE TYHKCKFTLE AINAAVYLSA RYIPDRQLPD KAIDLIDEAG SRARMESFNR
401: KKEGQSSILL KSPDEYWQEI RAAQNMHEVV SSNQMKYSPR QENGSAAIKA PSEDMNELTS ELQVEEPIVV GTEEIARVAS LWSGIPVQQL TADDRKLLVG
501: LDGELRKRVI GQDDAVMAIS RAVKRSRVGL NDPDRPIATL LFCGPTGVGK TELTKALAAS YFGSESAMLR LDMSEYMERH TVSKLIGSPP GYIGYGETGT
601: LTEAVRRKPF TVVLLDEIEK AHPDIFNILL QIFEDGHLSD SQGRRVSFKN TLIVMTSNIG STSISKGRRS MGFMTEDTES SSYVAMKSLV MEELKAFFRP
701: ELLNRIDEMV VFRPLEKTQM LAILDIILQE VKGRLLALGI GLEVSDAMKD LICEEGYDKS YGARPLRRAV THLIEDVISE AILFGEYKPG DTILMDIDAG
801: GKLCMSHLNE KVVQLSDPTR TF
001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
Arabidopsis Description
CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.