Factsheet for Os11t0267400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G014120.2	Barley	plastid	75.0	74.52
TraesCS4D01G081100.1	Wheat	plastid	74.68	74.04
TraesCS4A01G232800.1	Wheat	plastid	74.46	73.99
TraesCS4B01G083000.1	Wheat	plastid	74.36	73.72
Os04t0397100-01	Rice	plastid	31.65	73.2
Os12t0230100-01	Rice	plastid	70.82	71.82
Os11t0269000-00	Rice	cytosol, plasma membrane	27.15	64.21
Os02t0526400-01	Rice	cytosol, plasma membrane	37.98	43.07
Os03t0426900-01	Rice	plastid	40.88	38.96
Os05t0519700-01	Rice	nucleus	38.09	38.93
Os02t0537400-01	Rice	cytosol	18.13	38.58
Os02t0297132-00	Rice	cytosol	15.34	37.93
Os02t0181900-01	Rice	mitochondrion	39.27	37.23

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	EntrezGene:4350258	InterPro:AAA+_ATPase
ProteinID:AAX96285.1	ProteinID:ABA92591.1	EMBL:AK100126	InterPro:ATPase_AAA_core	ProteinID:BAF28034.1	ProteinID:BAT13547.1
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	EnsemblPlantsGene:Os11g0267400
EnsemblPlants:Os11t0267400-01	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572
PANTHER:PTHR43572:SF21	UniProt:Q53LY0	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923
UniParc:UPI00005094BF	InterPro:UVR_dom	RefSeq:XP_015617923.1	SEG:seg	:	:

Description

CLASS I CLP ATPASE C3Similar to ClpC. (Os11t0267400-01)

Coordinates

chr11:-:9193137..9198640

Molecular Weight (calculated)

100890.0 Da

IEP (calculated)

8.503

GRAVY (calculated)

-0.225

Length

932 amino acids

Sequence
(BLAST)

001: MERTLLNPPP SLRSPACRTT TATRIRPSSS MATMIPTPPP MRHARLVKAS AAGRRELHAP PIAPPILLGL RSPAAASYGR ASGGGGRRRG ARVVARMGFD
101: MFTDKAIKAI MMAQEEARRL GHHAAGSEQL LLGVIGEGTG IGAKVLRGAG LSLKAARAEV EKMAGRGPGM VPMEIKFTPA AKNVLQASQE EAHQLGHNYV
201: GSEHLLLGLL REHGAALVVL KNFQADPSNI RSEVIRMISD TSEDHQPVSA AVGGGSSTTK IPTLLEYGTN LTKLAEEGKL DPVVGRQNQV DRVVQILGRR
301: TKNNPCLIGE PGVGKTAIAE GLAQRIAAGN VPETIDGKTV ITLDMGLLVA GTKYRGEFEE RLKKLMDEVK QNGEIILFLD EVHTLVGAGA AEGAIDAANI
401: LKPALARGEL QCIGATTIDE YRKHIEKDPA LERRFQPVKV PEPTVDETIG ILKGLRERYE IHHKVQYTDE SLIAAARLSY QYISDRFLPD KAIDLVDEAG
501: SLVRLRNAQL PDEAKELEKK LKKIMAEKSE AIRSQDFEKA GALRGEEVEL KSEIMSLVDK SKEMSKAAVD SGESPGPTVT EADVQHIVSS WTGVPVEKVT
601: VDESSRLLAM ESSLHRRIVG QDEAVTAISR AIRRARVGLR DPRRPIASFI FAGPTGVGKS ELAKALAAYY YGSPEAMVRL DMSEFMEKHT VAKLVGSPPG
701: YVGYAEGGQL TEAIRRRPYA VVLFDEVEKA HPDVFNMMLQ ILDDGRLTDS KGRTVDFKNS LIIMTSNVGS GVIEKGGRQL GFAGDGSGDG GYGVIKNMVE
801: EEMKRYFRPE FLNRLDEMIV FRQLTKLEVK EIAGIMLAEV TGRIGGKGIG LQVTERFKEL VVEQGFDPSY GARPLRRAIM RLLEDTLTDK MLAGEICAGD
901: SVIVDADGDG NVVVVGRRSA GLPDLKSPAF TV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.