Factsheet for Os04t0397100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

plastid: 17189339
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	Os11t0171500-01	AT4G09570.1	19130088
AT5G50920.1	Os12t0169800-00	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0269000-00	Rice	cytosol, plasma membrane	58.56	59.9
GSMUA_Achr6P08040_001	Banana	cytosol	82.38	51.55
Zm00001d003894_P004	Maize	plastid	98.51	43.11
EES12052	Sorghum	plastid	98.26	43.0
Zm00001d025273_P019	Maize	plastid	98.01	42.89
HORVU2Hr1G071080.3	Barley	plastid	97.52	42.86
CDX84888	Canola	cytosol	87.59	42.68
TraesCS2B01G304200.1	Wheat	golgi	97.02	42.64
TraesCS2D01G285800.1	Wheat	plastid	97.02	42.64
CDY64710	Canola	cytosol	85.11	41.73
TraesCS2A01G287300.2	Wheat	plastid	91.56	41.23
Os12t0230100-01	Rice	plastid	93.55	41.02
Solyc12g042060.1.1	Tomato	plastid	91.56	39.98
PGSC0003DMT400037527	Potato	cytosol	91.56	39.98
KRH59753	Soybean	endoplasmic reticulum	90.57	39.72
KRH54115	Soybean	plastid	90.82	39.7
PGSC0003DMT400054236	Potato	plastid	89.58	39.67
KRH63851	Soybean	plastid	90.32	39.48
Solyc03g118340.2.1	Tomato	nucleus	90.57	39.42
PGSC0003DMT400036961	Potato	plastid	90.32	39.35
KRH41069	Soybean	mitochondrion, plastid	89.58	39.28
Bra022751.1-P	Field mustard	plastid	89.83	38.97
AT5G50920.1	Thale cress	plastid	89.58	38.86
GSMUA_Achr3P18630_001	Banana	plastid	86.35	38.54
CDY45800	Canola	plastid	87.34	38.22
Os02t0297132-00	Rice	cytosol	35.73	38.2
Bra029922.1-P	Field mustard	mitochondrion	86.85	37.72
CDX68504	Canola	mitochondrion	86.85	37.72
CDX83052	Canola	mitochondrion	86.6	37.65
CDY05878	Canola	mitochondrion	86.85	37.55
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	90.82	37.31
Bra018030.1-P	Field mustard	mitochondrion	82.13	37.27
GSMUA_Achr6P16470_001	Banana	plastid	80.65	37.1
AT3G48870.3	Thale cress	cytosol, plastid	84.12	35.61
Os02t0537400-01	Rice	cytosol	38.21	35.16
TraesCS4B01G082900.1	Wheat	mitochondrion	59.31	31.74
Os11t0267400-01	Rice	plasma membrane	73.2	31.65
GSMUA_AchrUn_...	Banana	plastid	72.21	24.85
Os02t0526400-01	Rice	cytosol, plasma membrane	48.88	23.97
Os02t0181900-01	Rice	mitochondrion	47.39	19.43
Os03t0426900-01	Rice	plastid	46.9	19.33
Os05t0519700-01	Rice	nucleus	40.45	17.87
VIT_07s0005g05810.t01	Wine grape	cytosol	0.74	4.41
VIT_16s0100g00180.t01	Wine grape	cytosol	0.74	4.41
GSMUA_Achr6P08050_001	Banana	cytosol	0.5	1.57
PGSC0003DMT400037525	Potato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	Gene3D:4.10.860.10	UniProt:A0A0P0W9M5	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	ProteinID:BAS89012.1	InterPro:ClpA/B	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:IPR001943	EnsemblPlantsGene:Os04g0397100
EnsemblPlants:Os04t0397100-01	InterPro:P-loop_NTPase	PFAM:PF02151	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	UniParc:UPI0000DD905C	InterPro:UVR_dom	:	:	:

Description

CLASS I CLP ATPASE C1Similar to ClpC protease. (Os04t0397100-01);Non-protein coding transcript. (Os04t0397100-02)

Coordinates

chr4:-:19601504..19603306

Molecular Weight (calculated)

45099.2 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.356

Length

403 amino acids

Sequence
(BLAST)

001: NEAVRGQDFE KAGELRDREM ELKAQITAII DKSKEMVKAE TESGEVGPLV TEADIQHIVS SWTGIPVEKV SSDESDRLLK MEETLHTRII GQDEAVKAIS
101: RAIRRARVGL KNPNRPIASF IFSGPTGVGK SELAKALAAY YFGSEEAMIR LDMSEFMERH TVSKLIGSPP GYVGYTEGGQ LTEAVRRRPY TVVLFDEIEK
201: AHPDVFNMML QILEDGRLTD SKGRTVDFKN TLLIMTSNVG SSVIEKGGRK IGFDLDYDEK DTSYNRIKSL VTEELKQYFR PEFLNRLDEM IVFRQLTKLE
301: VKEIADIMLK EVFDRLKAKD IDLQVTEKFR DRVVDEGYNP SYGARPLRRA IMRLLEDSLA EKMLAGEVKE GDSAIVDVDS EGKVIVLNGG SGVPEPLAPA
401: LSV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.