Factsheet for TraesCS4B01G082900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G50920.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G50920.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08040_001	Banana	cytosol	58.83	68.79
Os04t0397100-01	Rice	plastid	31.74	59.31
CDX84888	Canola	cytosol	62.28	56.71
CDY64710	Canola	cytosol	61.49	56.33
TraesCS4B01G083000.1	Wheat	plastid	67.73	54.26
GSMUA_Achr3P18630_001	Banana	plastid	64.81	54.04
GSMUA_Achr6P16470_001	Banana	plastid	62.15	53.42
TraesCS2B01G304200.1	Wheat	golgi	64.67	53.11
VIT_16s0100g00180.t01	Wine grape	cytosol	4.78	52.94
VIT_07s0005g05810.t01	Wine grape	cytosol	4.78	52.94
TraesCS6B01G233800.1	Wheat	plastid	64.28	52.84
Zm00001d025273_P019	Maize	plastid	64.54	52.77
EES12052	Sorghum	plastid	64.54	52.77
Zm00001d003894_P004	Maize	plastid	64.54	52.77
KRH63851	Soybean	plastid	64.54	52.71
TraesCS5B01G112500.1	Wheat	plastid	64.28	52.61
KRH54115	Soybean	plastid	64.41	52.6
Bra018030.1-P	Field mustard	mitochondrion	61.75	52.36
Solyc12g042060.1.1	Tomato	plastid	64.14	52.33
PGSC0003DMT400037527	Potato	cytosol	64.14	52.33
KRH59753	Soybean	endoplasmic reticulum	63.74	52.23
KRH41069	Soybean	mitochondrion, plastid	63.35	51.9
PGSC0003DMT400054236	Potato	plastid	62.68	51.87
AT5G50920.1	Thale cress	plastid	63.74	51.67
Solyc03g118340.2.1	Tomato	nucleus	63.48	51.62
Bra029922.1-P	Field mustard	mitochondrion	63.61	51.62
CDX68504	Canola	mitochondrion	63.61	51.62
CDY45800	Canola	plastid	63.08	51.57
PGSC0003DMT400036961	Potato	plastid	63.35	51.57
CDX83052	Canola	mitochondrion	63.48	51.56
CDY05878	Canola	mitochondrion	63.48	51.29
Bra022751.1-P	Field mustard	plastid	63.21	51.24
AT3G48870.3	Thale cress	cytosol, plastid	62.95	49.79
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	64.14	49.24
TraesCS5B01G554000.1	Wheat	cytosol	33.86	44.35
TraesCS5B01G422900.1	Wheat	cytosol	35.86	43.41
TraesCS5B01G422800.1	Wheat	cytosol	37.18	41.85
TraesCS5B01G537100.1	Wheat	mitochondrion	37.45	41.78
TraesCS7B01G357500.1	Wheat	cytosol	36.26	41.74
TraesCS4B01G046000.1	Wheat	cytosol	36.65	41.63
TraesCS7B01G357600.2	Wheat	cytosol	36.65	40.95
TraesCS2B01G158300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	36.65	40.0
TraesCS5B01G423000.1	Wheat	cytosol	36.26	39.62
TraesCS7B01G357400.1	Wheat	cytosol	34.66	39.13
TraesCS1B01G315600.1	Wheat	cytosol	36.79	37.74
GSMUA_AchrUn_...	Banana	plastid	58.43	37.57
TraesCS5B01G070000.1	Wheat	mitochondrion	23.51	37.34
TraesCS5B01G321800.1	Wheat	plastid	44.62	36.25
TraesCS2B01G307500.1	Wheat	plastid	45.29	36.12
TraesCS3B01G308100.1	Wheat	cytosol	42.5	35.05
TraesCS1B01G352400.1	Wheat	cytosol, golgi	42.63	35.01
TraesCS4B01G393100.1	Wheat	cytosol	41.43	34.55
TraesCS4B01G090300.1	Wheat	mitochondrion	35.19	34.11
TraesCS4B01G380800.1	Wheat	plastid	43.82	33.85
TraesCS6B01G174500.1	Wheat	mitochondrion	44.22	33.6
TraesCS6B01G278000.1	Wheat	cytosol	35.99	33.01
PGSC0003DMT400037525	Potato	plastid	3.72	11.02
GSMUA_Achr6P08050_001	Banana	cytosol	1.73	10.24

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	Gene3D:4.10.860.10	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF21	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4B01G082900	EnsemblPlants:TraesCS4B01G082900.1	TIGR:cd00009	SEG:seg

Description

No Description!

Coordinates

chr4B:+:81993504..81996505

Molecular Weight (calculated)

83056.3 Da

IEP (calculated)

6.486

GRAVY (calculated)

-0.295

Length

753 amino acids

Sequence
(BLAST)

001: MAHRHNAKMP GLRVAHAPAV TPGLGFSSTE QGLRMSSSRG KKDDRFVTRA MLEGFTEHAL DVMAVAQEET RLFLGQHNLA NVARIVAHTI VIVAVGYALD
101: EIFRRIFQAT RGQAVGARVV AGSSEAKMPT LEQYGTNLTK LAQEGKLAPV VGREKEIESV TQILGKMKKK NPCLIGEPGV GKTVIVEGLA LRITAGDVPE
201: TIQGKTVISL DMGPLVAGTK YRGEFEERLK NLMEELKQNG EVILFLDEVH TLVGAGAAEG AIDAANILKP ALARGEIQCI GATTFDEYAK HIEKDPALER
301: RFQPVKVLEP TVDEAIGILR GLQEGYEDHH KLRYTDEALI AAARLSQRYI SNRFLPDKAI DLIDEAGSQV RIRHGKVPEE VKDLCKKREE IIKRRDDAVR
401: CQNFELAKEL HMEELELTSQ ITSAVPMVTE ADIQRVVSSS TGIPVERVSA DESAGLLTME ETLHRRVVGQ DEAVKAVSRA MRRSRAGLRD PSRPIASFVF
501: AGPTGVGKTE VVKALAACNY GSEEAMVRLD MSEFSERHAV AKLVGASPGY VGYEEGGQLT EAVRRRPYAV VLFDEVEKAH RDVYNMLLQV LEDGRLTDGK
601: GRTVDFRNTI IIMTSNAGSG GDGEMTGVMV EKGMKEKHGF PPEFLNRLDE VIVFRELTKP EMKEIASKML EEVVRRMREK GMELRVTERF KELVAEEGYD
701: RSYGARPLRR AITRLLEDKL VDMMLAGEAK EGDSLTLDAD AEGNVVVHNR RAG

Best Arabidopsis Sequence Match ( AT3G48870.1 )
(BLAST)

001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.