Factsheet for PGSC0003DMT400037527

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT5G50920.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042060.1.1	Tomato	plastid	99.67	99.67
GSMUA_Achr6P08050_001	Banana	cytosol	13.54	98.43
PGSC0003DMT400036961	Potato	plastid	94.8	94.59
CDX84888	Canola	cytosol	83.75	93.47
PGSC0003DMT400054236	Potato	plastid	91.22	92.53
GSMUA_Achr6P08040_001	Banana	cytosol	64.36	92.24
CDY64710	Canola	cytosol	81.69	91.73
Os04t0397100-01	Rice	plastid	39.98	91.56
KRH54115	Soybean	plastid	89.71	89.8
KRH63851	Soybean	plastid	89.71	89.8
KRH59753	Soybean	endoplasmic reticulum	88.84	89.23
GSMUA_Achr3P18630_001	Banana	plastid	86.78	88.7
KRH41069	Soybean	mitochondrion, plastid	87.76	88.14
Zm00001d025273_P019	Maize	plastid	87.87	88.06
TraesCS6A01G195200.1	Wheat	plastid	87.32	87.99
TraesCS6D01G183600.2	Wheat	cytosol, plastid	87.32	87.99
HORVU2Hr1G071080.3	Barley	plastid	87.32	87.9
EES12052	Sorghum	plastid	87.65	87.84
Zm00001d003894_P004	Maize	plastid	87.65	87.84
AT5G50920.1	Thale cress	plastid	88.41	87.84
TraesCS6B01G233800.1	Wheat	plastid	87.11	87.77
TraesCS2D01G285800.1	Wheat	plastid	87.11	87.68
TraesCS2B01G304200.1	Wheat	golgi	87.11	87.68
Bra022751.1-P	Field mustard	plastid	88.19	87.62
CDY45800	Canola	plastid	87.22	87.41
TraesCS2A01G287300.2	Wheat	plastid	84.62	87.26
Bra018030.1-P	Field mustard	mitochondrion	83.32	86.6
GSMUA_Achr6P16470_001	Banana	plastid	82.12	86.53
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	91.55	86.14
KXG23307	Sorghum	plastid	85.7	85.88
Os12t0230100-01	Rice	plastid	85.37	85.75
Zm00001d024009_P001	Maize	plastid	85.48	85.67
CDX68504	Canola	mitochondrion	85.59	85.13
Bra029922.1-P	Field mustard	mitochondrion	85.48	85.02
CDX83052	Canola	mitochondrion	85.37	85.01
CDY05878	Canola	mitochondrion	85.59	84.76
TraesCS5A01G118900.1	Wheat	unclear	84.29	84.57
TraesCS5B01G112500.1	Wheat	plastid	84.29	84.57
TraesCS5D01G118700.1	Wheat	plastid	84.07	84.35
GSMUA_Achr8P09160_001	Banana	plastid	83.53	83.44
AT3G48870.3	Thale cress	cytosol, plastid	84.62	82.04
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	83.86	79.55
PGSC0003DMT400037525	Potato	plastid	19.39	70.47
TraesCS4B01G082900.1	Wheat	mitochondrion	52.33	64.14
GSMUA_AchrUn_...	Banana	plastid	80.17	63.19
PGSC0003DMT400036893	Potato	plastid	43.34	41.45
PGSC0003DMT400003652	Potato	cytosol, plastid	42.04	39.63
PGSC0003DMT400063352	Potato	nucleus	39.11	39.58

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:102577503	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:AAR25794	ProteinID:AAR25794.1	InterPro:ATPase_AAA_core	EMBL:AY450635	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	UniProt:M1B5I2	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	EnsemblPlantsGene:PGSC0003DMG402014476	PGSC:PGSC0003DMG402014476
EnsemblPlants:PGSC0003DMT400037527	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572
PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00029541F4
InterPro:UVR_dom	RefSeq:XP_006346636.1	SEG:seg	:	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG402014476]

Coordinates

chr12:+:48732157..48738795

Molecular Weight (calculated)

102209.0 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.338

Length

923 amino acids

Sequence
(BLAST)

001: MARALVQSTS IPSSVAGERT TKFNGSGKTK RAVTMLCNAQ SSSLTLRDFT GLRGCNAIDT LVRSGQTLQS KVAAATYVRR PRGCRFVPKA MFERFTEKAI
101: KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLENLGAD PSNIRTQVIR MVGESNEAVG ASVGGGTSGQ KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVTQILGR RTKNNPCLIG
301: EPGVGKTAIA EGLAQRIANG DVPETIEGKK VITLDMGLLV AGTKYRGEFE ERLKKLMEEI KQSDEIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE
401: LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDETI QILKGLRERY EIHHKLRYTD EALVAAAQLS YQYISDRFLP DKAIDLIDEA GSRVRLRHAQ
501: LPEEAKELEK ELRQITKEKN EAVRGQDFEK AGELRDREMD LKAQITALID KNKEVSKAES EAADTGPLVT EADIQHIVSS WTGIPVEKVS TDESDRLLKM
601: EETLHTRIIG QDEAVKAISR AIRRARVGLK NPNRPIASFI FSGPTGVGKS ELAKALATYY FGSEEAMIRL DMSEFMERHT VSKLIGSPPG YVGYTEGGQL
701: TEAVRRRPYT VVLFDEIEKA HPDVFNMMLQ ILEDGRLTDS KGRTVDFKNT LLIMTSNVGS SVIEKGGRRI GFDLDFDEKD SSYNRIKSLV TEELKQYFRP
801: EFLNRLDEMI VFRQLTKLEV KEIADIMLKE VFERLKVKEI ELQVTERFRD RVVDEGYNPS YGARPLRRAI MRLLEDSMAE KMLAGEIKEG DSVIVDVDSD
901: GNVTVLNGSS GTPSDPAPEP IPV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.