Factsheet for PGSC0003DMT400036893

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51070.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G51070.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G51070.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G51070.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G51070.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G51070.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G51070.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117950.2.1	Tomato	nucleus	97.62	97.72
VIT_19s0014g00020.t01	Wine grape	plastid	69.33	70.72
GSMUA_Achr6P23780_001	Banana	cytosol	59.9	68.4
AT5G51070.1	Thale cress	plastid	66.84	68.25
CDY38846	Canola	plastid	65.6	67.99
Bra029193.1-P	Field mustard	plastid	66.01	67.55
CDY32646	Canola	plastid	65.08	67.24
CDX71686	Canola	plastid	64.25	66.52
OQU81478	Sorghum	cytosol	56.99	64.63
Os02t0526400-01	Rice	cytosol, plasma membrane	53.78	63.14
HORVU5Hr1G081860.1	Barley	cytosol	49.74	62.83
Zm00001d003847_P001	Maize	plastid	60.0	62.12
HORVU2Hr1G072020.5	Barley	plastid	53.68	62.11
KRH63903	Soybean	plastid	60.41	61.63
KRH54048	Soybean	plastid	60.62	61.58
TraesCS2B01G307500.1	Wheat	plastid	58.55	59.85
TraesCS2D01G289100.1	Wheat	plastid	58.65	59.83
TraesCS2A01G291100.1	Wheat	plastid	58.65	59.83
Zm00001d016664_P001	Maize	plastid	58.65	59.77
TraesCS5B01G321800.1	Wheat	plastid	56.99	59.33
TraesCS5A01G321300.1	Wheat	plastid	56.79	59.18
EES05165	Sorghum	plastid	58.45	58.93
TraesCS5D01G328100.1	Wheat	plastid	56.79	58.92
GSMUA_Achr10P...	Banana	plastid	57.93	56.41
PGSC0003DMT400037527	Potato	cytosol	41.45	43.34
PGSC0003DMT400054236	Potato	plastid	40.83	43.3
PGSC0003DMT400036961	Potato	plastid	41.35	43.14
PGSC0003DMT400063352	Potato	nucleus	33.89	35.86
PGSC0003DMT400003652	Potato	cytosol, plastid	35.96	35.44
PGSC0003DMT400037525	Potato	plastid	6.32	24.02

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:102598011	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538
GO:GO:0034605	GO:GO:1901002	GO:GO:1902584	InterPro:IPR036628	UniProt:M1B4G3	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	EnsemblPlantsGene:PGSC0003DMG400014225	PGSC:PGSC0003DMG400014225
EnsemblPlants:PGSC0003DMT400036893	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF20
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000296AEFA	RefSeq:XP_006341443.1
SEG:seg	:	:	:	:	:

Description

ERD1 protein, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400014225]

Coordinates

chr3:-:57513695..57521016

Molecular Weight (calculated)

105683.0 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.190

Length

965 amino acids

Sequence
(BLAST)

001: MELSCSSPLS VNSTISFNRY VSVYPHRRCQ SVLSLFPYCP PPSSHVATTA TASAACSTSS STSTLFGISL SHRPSSSVSR KIKRSLYIVS GVFERFTERS
101: IKAVMFSQKE AKALGKDMVN TQHLLLGLIA EDRSPGGFLG SRITIDKARE AVRSIWLGDS EDDTAKLGSQ DSASATSATD VAFSSSTKRV FEAAVEYSRT
201: MGYNYIAPEH IAIGLFTVDD GSAGRVLKRL GANVNRLAAE AVSRLQGELA KDGRDPISFK RSREKSFPGK ITIDRSAEQA KAEKNALEQF CVDLTARASE
301: GLIDPVIGRE TEVQRMIEIL CRRTKNNPIL LGQAGVGKTA IAEGLAINIA EGNIPAFLMK KRVMSLDIGL LISGAKERGE LEARVTTLIK DVKESGHIIL
401: FIDEVHTLVG AGTVGRGNKG SGLDIANLLK PTLGRGELQC IASTTMDEFR LHIEKDKAFA RRFQPILINE PSQADAVQIL LGLREKYESH HKCRYSLEAI
501: NAAVELSSRY IPDRYLPDKA IDLIDEAGSK SRMQAHKRRK EQQISVLSQS PSDYWQEIRA VQTMHEVILA SKLTGNDDVS RLDDDSELHL QPASSSTSDE
601: HEPPLVGPEE IAAVASLWTG IPLKQLTVDE RMLLVGLDEQ LKKRVVGQDE AVTSICRAVK RSRTGLKHPN RPISAMLFCG PTGVGKSELA KALAASYFGS
701: ESAMLRLDMS EYMERHTVSK LIGSPPGYVG YGEGGTLTEA IRRKPFTVVL LDEIEKAHPD IFNILLQLFE DGHLTDSQGR RVSFKNALIV MTSNVGSTAI
801: VKGRQNTIGF LLADDESAAS YAGMKAIVME ELKTYFRPEL LNRIDEVVVF RPLEKPQMLE ILNLMLQEVR ARLVSLGISL EVSEAVMDLI CQQGFDRNYG
901: ARPLRRAVTQ MVEDLLCESV LSGDFKPGDV AMIHLDESGN PVVINQSSQS IQLSDTNGNP VVTNR

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.