Factsheet for VIT_19s0014g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P23780_001	Banana	cytosol	62.26	69.7
PGSC0003DMT400036893	Potato	plastid	70.72	69.33
Solyc03g117950.2.1	Tomato	nucleus	70.4	69.09
AT5G51070.1	Thale cress	plastid	68.82	68.89
CDY38846	Canola	plastid	67.23	68.31
CDY32646	Canola	plastid	66.91	67.77
Bra029193.1-P	Field mustard	plastid	67.55	67.76
CDX71686	Canola	plastid	66.17	67.17
OQU81478	Sorghum	cytosol	60.25	66.98
Os02t0526400-01	Rice	cytosol, plasma membrane	56.55	65.09
HORVU5Hr1G081860.1	Barley	cytosol	52.33	64.79
KRH63903	Soybean	plastid	64.38	64.38
KRH54048	Soybean	plastid	64.16	63.89
Zm00001d003847_P001	Maize	plastid	62.79	63.73
HORVU2Hr1G072020.5	Barley	plastid	55.92	63.43
TraesCS2A01G291100.1	Wheat	plastid	60.99	60.99
TraesCS2B01G307500.1	Wheat	plastid	60.78	60.91
Zm00001d016664_P001	Maize	plastid	60.89	60.82
TraesCS5B01G321800.1	Wheat	plastid	59.41	60.63
TraesCS2D01G289100.1	Wheat	plastid	60.57	60.57
EES05165	Sorghum	plastid	61.21	60.5
TraesCS5A01G321300.1	Wheat	plastid	59.2	60.48
TraesCS5D01G328100.1	Wheat	plastid	59.09	60.11
GSMUA_Achr10P...	Banana	plastid	59.62	56.91
VIT_07s0005g05810.t01	Wine grape	cytosol	3.81	52.94
VIT_16s0100g00180.t01	Wine grape	cytosol	3.81	52.94
VIT_14s0068g01220.t01	Wine grape	cytosol	29.39	49.2
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	41.33	39.86
VIT_17s0000g07190.t01	Wine grape	nucleus	34.46	35.78
VIT_14s0108g01500.t01	Wine grape	plastid	36.36	35.25
VIT_04s0008g05870.t01	Wine grape	mitochondrion	35.1	34.51

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100248728	wikigene:100248728	MapMan:19.4.2.9.5	Gene3D:3.40.50.300
UniProt:A5B4Z4	InterPro:AAA+_ATPase	EMBL:AM446785	InterPro:ATPase_AAA_core	ProteinID:CAN67541	ProteinID:CAN67541.1
ProteinID:CBI20081	ProteinID:CBI20081.3	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	EMBL:FN595229	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987
GO:GO:0019538	GO:GO:0034605	GO:GO:1901002	GO:GO:1902584	InterPro:IPR036628	EntrezGene:LOC100248728
wikigene:LOC100248728	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF20	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00015204D9	ArrayExpress:VIT_19s0014g00020	EnsemblPlantsGene:VIT_19s0014g00020
EnsemblPlants:VIT_19s0014g00020.t01	RefSeq:XP_002283802	RefSeq:XP_002283802.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:20819..28361

Molecular Weight (calculated)

103525.0 Da

IEP (calculated)

7.898

GRAVY (calculated)

-0.110

Length

946 amino acids

Sequence
(BLAST)

001: MEVSSSSLSS SSPLSVHWRR DFSPLLGRVS LDCHGSRKLP NRPFSSSTCS CFGISISQRP HSHSFVFRKS SPRISAVFER FTERAIKAVI FSQREAKALG
101: RNMVFTQHLL LGLVAEDRSL DGFLGSGITI DDARDAVRSI WHDYNDSSII SGIPSSQTSV ASSTDVPFSI STKRVFEAAI EYSRTMGYNF IAPEHIAIGL
201: FTVDDGSAGR VLKRLGANVN HLAAVAVSRL QGELAKDGSE PSATFKGMQG KSFSGKAAIV KSSGKKKEKS ALAQFCVDLT ARATDGLIDP VIGRDMEVQR
301: VVQILCRRTK NNPILLGESG VGKTAIAEGL AISIAEADVP SFLLTKRIMS LDIGLLMAGT KERGELEARV TTLISDILKS GNIILFIDEV HMLVGSGIAG
401: RGNKGSGLDI ASLLKPSLGR GQLQCFASTT IDEYVKLFEK DKALARRFQP VLINEPSQEE AVRILLGLRE KYEAHHKCRF TLEAINAAVH LSARYIPDRR
501: LPDKAIDLID EAGSKARMEA YKRKKEKQTS VLLKSPDDYW QEIRAVKAMH EMVMASKLKN CNGASCMEDG STVLFESPLP SMSDDNEPIV VGPNEIAVVA
601: SLWSGIPVQQ ITADERMLLV GLHEQLRKRV VGQDNAIASI SRAVKRSRVG LKDPNRPIAA MLFCGPTGVG KTELAKALAA CYFGSEAAMV RLDMSEYMEQ
701: HSVSKLIGSP PGYVGYGEGG TLTEAIRRQP FTVVLLDEIE KAHPDIFNIL LQMFEDGHLT DSQGRRVLFR NALVVMTSNV GSAAIAKGRQ SSIGFSIADD
801: EPTSYAGMKA LVMEELKAYF RPELLNRLDE IVVFHPLEKA QMLEILNTML QEVKERLSSL GIGMEVSVSV IDLLCQQGYD KNYGARPLRR AVTLIIEDPL
901: SEALLTEEYQ PGDIAVVDLD ASGNPFVRKQ SNRRIHLSDT AYDEKL

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.