Factsheet for GSMUA_Achr6P23780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G081860.1	Barley	cytosol	63.2	69.9
OQU81478	Sorghum	cytosol	70.18	69.68
Os02t0526400-01	Rice	cytosol, plasma membrane	66.86	68.73
HORVU2Hr1G072020.5	Barley	plastid	66.98	67.87
GSMUA_Achr10P...	Banana	plastid	75.86	64.68
Zm00001d003847_P001	Maize	plastid	70.53	63.95
TraesCS2B01G307500.1	Wheat	plastid	70.18	62.82
Zm00001d016664_P001	Maize	plastid	70.3	62.72
TraesCS2D01G289100.1	Wheat	plastid	69.82	62.37
TraesCS2A01G291100.1	Wheat	plastid	69.82	62.37
VIT_19s0014g00020.t01	Wine grape	plastid	69.7	62.26
EES05165	Sorghum	plastid	70.3	62.07
TraesCS5A01G321300.1	Wheat	plastid	67.93	61.99
TraesCS5D01G328100.1	Wheat	plastid	68.17	61.94
TraesCS5B01G321800.1	Wheat	plastid	67.93	61.92
CDY38846	Canola	plastid	67.34	61.12
Bra029193.1-P	Field mustard	plastid	67.93	60.87
CDY32646	Canola	plastid	66.98	60.6
AT5G51070.1	Thale cress	plastid	67.57	60.42
Solyc03g117950.2.1	Tomato	nucleus	68.52	60.06
PGSC0003DMT400036893	Potato	plastid	68.4	59.9
CDX71686	Canola	plastid	65.92	59.76
KRH54048	Soybean	plastid	64.14	57.05
KRH63903	Soybean	plastid	63.79	56.98
GSMUA_Achr6P08040_001	Banana	cytosol	39.17	51.4
GSMUA_Achr6P16470_001	Banana	plastid	44.14	42.58
GSMUA_Achr3P18630_001	Banana	plastid	44.62	41.75
GSMUA_Achr8P09160_001	Banana	plastid	44.02	40.26
GSMUA_Achr9P22420_001	Banana	cytosol	39.17	37.49
GSMUA_Achr6P16670_001	Banana	plastid	39.53	35.65
GSMUA_Achr3P16240_001	Banana	cytosol	35.15	34.86
GSMUA_Achr1P13710_001	Banana	cytosol	34.56	34.31
GSMUA_Achr6P08050_001	Banana	cytosol	4.38	29.13
GSMUA_AchrUn_...	Banana	plastid	40.0	28.86
GSMUA_Achr2P12140_001	Banana	plastid	4.73	17.47

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G23780_001	EnsemblPlants:GSMUA_Achr6P23780_001	EnsemblPlants:GSMUA_Achr6T23780_001	InterPro:IPR036628	UniProt:M0T9M6
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF20	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000296ECEB	SEG:seg	:	:

Description

ERD1 protein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G23780_001]

Coordinates

chr6:-:24073089..24084556

Molecular Weight (calculated)

92234.7 Da

IEP (calculated)

5.512

GRAVY (calculated)

-0.163

Length

845 amino acids

Sequence
(BLAST)

001: MFSQREAQTH GMGIVFNQHL LLGLVAEDKS PSGFLGTGIT IDRAREAVRA IWPDGVAADQ ATTPSSGSST GVPFSLNSKR VFQAAVECSK NMGCKFIAPE
101: HITIGLLNAD DGSVAQVLQS LGTDLSHLAS VALSRLHGEL AKDGREPVAS SQKMPEKSLD RKSASLRSSD KTKEKSPLAQ FCVDLTALAS EDLIDPVIGR
201: DTEIQRIVQI LCRRTKNNPI LLGDPGVGKT AIAEGLALRI AKGEIPSFLK EKRIMSLDVG LLMAGAKERG GLESRVTGLI SEVQKAGDII LFIDEVHTLI
301: GSGSVGRGNN SSGLDIANLL KPALGRGELQ CIASTTLDEH KTHFDKDKAL ARRFQPVLIN EPSQEDAVKI LLGLREKYEI HHKCTFTLEA INAAVYLSAR
401: YIPDRHLPDK AIDLIDEAGS RAHMDAFKKK KEEQISVLSK SPEEYWREIR AVQAMHDMVL ANKTTDDSET LVDVKEVSEF SIPYSQDYDG QVIVGPEEIA
501: TVASLWSGIP VQQLNADERK LLVGLDEELR KRVIGQDDAV NAISRAVKRS RVGLKDPDRP IAAMLFCGPT GVGKTELTKA LAASYFGSED AMLRLDMSEY
601: MERHTVSKLI GSPPGYIGYG DGGTLTEAVR RRPFTVILLD EIEKAHPDIF NILLQVFEDG HLTDSQGRRV SFKNTLIVMT SNVGSEAISK GKRSIGFLIA
701: EDTVSNSYAS MKALVMEELK AYFRPELLNR IDEVVVFRSL EQTQMLAILN IMLEQVKSRL SSLGIGLEVS DAIMNLVCEQ GFDRNYGARP LRRAVTQIIE
801: DVISEAILAG DYKPGDTLTL DVDGTGNPVV NQLPDQSIHW SDATV

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.