CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38846	Canola	plastid	91.52	91.62
CDY32646	Canola	plastid	91.42	91.22
AT5G51070.1	Thale cress	plastid	92.27	91.01
VIT_19s0014g00020.t01	Wine grape	plastid	67.17	66.17
GSMUA_Achr6P23780_001	Banana	cytosol	59.76	65.92
Solyc03g117950.2.1	Tomato	nucleus	66.63	64.42
OQU81478	Sorghum	cytosol	58.8	64.39
PGSC0003DMT400036893	Potato	plastid	66.52	64.25
HORVU5Hr1G081860.1	Barley	cytosol	52.47	64.01
HORVU2Hr1G072020.5	Barley	plastid	56.22	62.83
Os02t0526400-01	Rice	cytosol, plasma membrane	55.26	62.65
KRH63903	Soybean	plastid	62.66	61.73
Zm00001d003847_P001	Maize	plastid	61.48	61.48
KRH54048	Soybean	plastid	62.55	61.37
TraesCS2B01G307500.1	Wheat	plastid	60.41	59.64
TraesCS5B01G321800.1	Wheat	plastid	59.23	59.55
TraesCS2A01G291100.1	Wheat	plastid	60.41	59.51
TraesCS2D01G289100.1	Wheat	plastid	60.41	59.51
TraesCS5A01G321300.1	Wheat	plastid	59.01	59.4
TraesCS5D01G328100.1	Wheat	plastid	59.23	59.35
Zm00001d016664_P001	Maize	plastid	59.23	58.29
EES05165	Sorghum	plastid	59.76	58.2
GSMUA_Achr10P...	Banana	plastid	58.58	55.1
CDY64710	Canola	cytosol	42.38	48.05
CDX84888	Canola	cytosol	41.95	47.28
CDY64721	Canola	cytosol	11.7	44.67
CDX68504	Canola	mitochondrion	43.24	43.43
CDX83052	Canola	mitochondrion	43.13	43.37
CDY05878	Canola	mitochondrion	43.35	43.35
CDY45800	Canola	plastid	42.7	43.21
CDX85552	Canola	cytosol	11.59	42.35
CDX96531	Canola	cytosol	30.9	38.76
CDX73074	Canola	cytosol	30.9	38.76
CDX68190	Canola	nucleus	33.48	38.28
CDY53470	Canola	mitochondrion	32.19	37.83
CDX90991	Canola	plastid	37.66	36.41
CDX85823	Canola	nucleus	34.44	36.35
CDY68892	Canola	mitochondrion, plastid	32.19	36.19
CDY26423	Canola	plastid	37.12	35.56
CDX76768	Canola	mitochondrion	37.02	35.46
CDX69524	Canola	plastid	37.02	35.46
CDY56280	Canola	mitochondrion	37.02	35.42
CDX85551	Canola	plastid	22.0	31.35

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	GO:A0A078C3W8	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX71686	ProteinID:CDX71686	ProteinID:CDX71686.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00152360001
InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572	PANTHER:PTHR43572:SF20	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EDC5E5	SEG:seg	:

Description

BnaC09g27270D

Coordinates

chrLK031794:+:3000545..3004838

Molecular Weight (calculated)

101939.0 Da

IEP (calculated)

6.138

GRAVY (calculated)

-0.217

Length

932 amino acids

Sequence
(BLAST)

001: MEVLSTSSLL TLHSRRLASS SSNRIDSSSS SHVASFAASS LSSFASSYLG VSLSNCKIQR FSTTATNFHR FPPKKRKKFT PISAVFERFT ERAIRAIIFS
101: QKEAKSLGKD MVYPQHLLLG LIAEDRDPQG FLGSGVTVDK APNSDSNLSK QQEESSTSSY SKSTDMPFSI STKRVFEAAV EYSRTLDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PPSSPNARIV GPGRTKTKSV LEQFCVDLTA RAVEGLIDPV IGREKEVERV IQILCRRTKN
301: NPILLGEAGV GKTAIAEGLA ISIAEANAPG FLLGKRIMSL DIGLLMAGAK ERGELESRVT ALISEVKKSG KVILFIDEVH TLIGSGTVGK GNKGSGLDIA
401: NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LIDEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL PDKAIDLIDE
501: AGSRARIEAF RKKKDDATCI LSKPPDDYWQ EIRIVQAMHE VVLSSRQNQD DGSDESGELV EESSLPPAAG NDEPIQVGPD DIAAVASAWS GIPVQQITAD
601: ERMLLMGLEE KLRSRVVGQD EAVAAISRAV KRSRVGLKDP DRPIAAMLFC GPTGVGKTEL TKALSANYFG SEESMLRLDM SEYMERHTVS KLIGSPPGYV
701: GFEEGGMLTE AIRRRPFTVV LFDEIEKAHP DIFNILLQLF EDGHLTDSQG RRVSFKNALI IMTSNVGSSA IAKGRHGSIG FILDDDEEEA SYAGMKAMVV
801: EELKNYFRPE LLNRIDEIVI FRQLEKAQMM EILNLMLQDL KSRLVALGVG LEVSEPVKEL ICRQGYDPSY GARPLRRTVT EIVEDPLSEA FLAGSFKPGD
901: TAFVVLDDTG NPSVRTKPDS STVRVTDKKS IA

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.