CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85552	Canola	cytosol	61.07	58.43
CDY53470	Canola	mitochondrion	97.54	30.01
CDY68892	Canola	mitochondrion, plastid	100.0	29.43
KRH52355	Soybean	cytosol, mitochondrion	66.39	24.88
CDX76768	Canola	mitochondrion	79.92	20.04
CDY56280	Canola	mitochondrion	79.92	20.02
GSMUA_Achr9P22420_001	Banana	cytosol	68.44	18.91
VIT_04s0008g05870.t01	Wine grape	mitochondrion	70.9	17.98
KRH61688	Soybean	mitochondrion	70.9	17.76
HORVU6Hr1G028690.1	Barley	mitochondrion	70.49	17.48
Os02t0181900-01	Rice	mitochondrion	70.08	17.4
EES06386	Sorghum	mitochondrion	70.08	17.27
TraesCS6D01G135600.1	Wheat	golgi	70.08	17.26
TraesCS6B01G174500.1	Wheat	mitochondrion	70.08	17.26
TraesCS6A01G146400.1	Wheat	mitochondrion	70.08	17.26
CDX96531	Canola	cytosol	47.54	15.61
CDX73074	Canola	cytosol	47.54	15.61
CDX90991	Canola	plastid	60.66	15.35
CDY26423	Canola	plastid	59.84	15.01
CDX69524	Canola	plastid	59.84	15.01
CDX68190	Canola	nucleus	47.54	14.23
CDY64710	Canola	cytosol	45.08	13.38
CDX84888	Canola	cytosol	45.08	13.3
CDX85823	Canola	nucleus	47.95	13.25
CDX83052	Canola	mitochondrion	46.31	12.19
CDX68504	Canola	mitochondrion	45.9	12.07
CDY05878	Canola	mitochondrion	45.9	12.02
CDY45800	Canola	plastid	45.08	11.94
CDY38846	Canola	plastid	44.67	11.71
CDX71686	Canola	plastid	44.67	11.7
CDY32646	Canola	plastid	44.67	11.67
CDX85551	Canola	plastid	1.64	0.61
Zm00001d008786_P001	Maize	plastid	0.41	0.56
Solyc06g011380.2.1	Tomato	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078JGE0	UniProt:A0A078JGE0	InterPro:ATPase_AAA_core
EnsemblPlants:CDY64721	ProteinID:CDY64721	ProteinID:CDY64721.1	InterPro:ClpA/B	InterPro:Clp_ATPase_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00042612001	InterPro:P-loop_NTPase	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM01086	SUPFAM:SSF52540
UniParc:UPI0004EDC144	SEG:seg	:	:	:	:

Description

BnaC04g37500DBnaC04g37500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGE0]

Coordinates

chrLK034531:-:20627..21451

Molecular Weight (calculated)

27863.4 Da

IEP (calculated)

4.901

GRAVY (calculated)

-0.425

Length

244 amino acids

Sequence
(BLAST)

001: MSEYMEKSNV SRLIGASPGF VGYEEGGQLT EAVRRRPYSV VLFDEIEKAH PDVFNILLQL LDDGRVTDSQ GRTVSFRNCF VIMTSNIGAQ SILDTFRGNE
101: DRKEAVYETM KQQVVELARK TFKPEFMNRI DEYIVFQPLD TKEISKIVEI QMRRVKNRLE ENKIKLEYTQ EAVDHLAQLG FDPNNGARPV KRVIEKIVKK
201: EIANKVLKGE FAADDTILLD VDQTSNELVI KKLESDAPVE EMAA

Best Arabidopsis Sequence Match ( AT2G25140.1 )
(BLAST)

001: MALRRLSKSV SSAIKAQYTL SRPSPLLRSR SLSSSPHYTS IGRPTNSFIG KINNSSITHA TTTHGQLFPL SSPRRFCTTT AQVNQNEFTE MAWEGLINAF
101: DAARESKQQI VESEHLMKAL LEQKDGMARK IFTKAGIDNS SVLQATDLFI SKQPTVSDAS GQRLGSSLSV ILENAKRHKK DMLDSYVSVE HFLLAYYSDT
201: RFGQEFFRDM KLDIQVLKDA IKDVRGDQRV TDRNPESKYQ ALEKYGNDLT EMARRGKLDP VIGRDDEIRR CIQILCRRTK NNPVIIGEPG VGKTAIAEGL
301: AQRIVRGDVP EPLMNRKLIS LDMGSLLAGA KFRGDFEERL KAVMKEVSAS NGQTILFIDE IHTVVGAGAM DGAMDASNLL KPMLGRGELR CIGATTLTEY
401: RKYIEKDPAL ERRFQQVLCV QPSVEDTISI LRGLRERYEL HHGVTISDSA LVSAAVLADR YITERFLPDK AIDLVDEAGA KLKMEITSKP TELDGIDRAV
501: IKLEMEKLSL KNDTDKASKE RLQKIENDLS TLKQKQKELN VQWEKEKSLM TKIRSFKEEI DRVNLEIESA EREYDLNRAA ELKYGTLLSL QRQLEEAEKN
601: LTNFRQFGQS LLREVVTDLD IAEIVSKWTG IPLSNLQQSE REKLVMLEEV LHHRVIGQDM AVKSVADAIR RSRAGLSDPN RPIASFMFMG PTGVGKTELA
701: KALAGYLFNT ENAIVRVDMS EYMEKHSVSR LVGAPPGYVG YEEGGQLTEV VRRRPYSVVL FDEIEKAHPD VFNILLQLLD DGRITDSQGR TVSFKNCVVI
801: MTSNIGSHHI LETLRNNEDS KEAVYEIMKR QVVELARQNF RPEFMNRIDE YIVFQPLDSN EISKIVELQM RRVKNSLEQK KIKLQYTKEA VDLLAQLGFD
901: PNYGARPVKR VIQQMVENEI AVGILKGDFA EEDTVLVDVD HLASDNKLVI KKLESNASAE EMAA

Arabidopsis Description

CLPB4Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.